View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1040_low_1 (Length: 686)
Name: NF1040_low_1
Description: NF1040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1040_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 73 - 660
Target Start/End: Complemental strand, 25839969 - 25839382
Alignment:
| Q |
73 |
cacgacttaagtgcctcctcttgatcaaaactatcacaattcaaacatgcaccaaaatttttaccacgaattttatttatgtgtaacatagtgatcaata |
172 |
Q |
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| T |
25839969 |
cacgacttaagtgcctcctcttgatcaaaactatcagaattcaaacatgcaccaaaatttttaccacgaattttatttatgtgtaacatagtgatcaata |
25839870 |
T |
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| Q |
173 |
aactcaatttgaatccaaatcaacaacaaacatatgtttcaaccttttaccaatattatagtatagtctcgaggatagaaaaatattattcaaatggaag |
272 |
Q |
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| T |
25839869 |
aactcaatttgaatccaaatcaacaacaaacatatgtttcaaccttttaccaatattatagtatagtctcgaggatagaaaaatattattcaaatggaag |
25839770 |
T |
|
| Q |
273 |
acttcaataaagatggtccaaataaattctttgatgagattaatacagaagtacaaaacgaatagacacttgatagtaataacatgtttgcaaaaagaaa |
372 |
Q |
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| T |
25839769 |
acttcaataaagatggtccaaataaattctttgatgagattaatacagaagtacaaaacgaatagacacttgatagtaataacatgtttgcaaaaagaaa |
25839670 |
T |
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| Q |
373 |
atgtataaatttaaagaaaattaactataattacatcaaagataagaaccattttcatcaatttggtacattaattctcaatcaaatcatttccaaatgt |
472 |
Q |
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| T |
25839669 |
atgtataaatttaaagaaaattaactataattacatcaaagataagaaccattttcatcaatttggtacattaattctcaatcaaatcatttccaaatgt |
25839570 |
T |
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| Q |
473 |
atttttgttaaccatggtgttatcgaaagaaagatctctaataattcggaattcaacctagatataagtaaaatctgattaaaaattgctccatccataa |
572 |
Q |
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| T |
25839569 |
atttttgttaaccatggggttatcgaaagaaagatctctaataattcggaattcaacctagatataagtaaaatctgattaaaaattgctccatccataa |
25839470 |
T |
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| Q |
573 |
accgaactcatattctcattaacatggnnnnnnnnncttctcacaaaggatttttagttctccgtatttgtatagagtataaatataa |
660 |
Q |
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| T |
25839469 |
accgaactcatattctcattaacatggttttttttctttctcacaaaggatttttagttctccgtatttatataaagtataaatataa |
25839382 |
T |
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