View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10410_high_1 (Length: 447)
Name: NF10410_high_1
Description: NF10410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10410_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 10310318 - 10310513
Alignment:
| Q |
1 |
agtcctacctgatccattgtgcaacacttcctgatcaatggtccaacatgtaaagtttcatcaagttgttctttaaggttcttcaggccctgttctgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10310318 |
agtcctacctgatccattgtgcaacacttcctgatcaatggtccaacatgtaaagtttcatcaagttgttctttaaggttcttcaggccctgttctgttt |
10310417 |
T |
|
| Q |
101 |
ttgacagtccttcagaatcctatagcataaattcaaagacaaataaatacataaaactcccaaagagttcaaacacgcaagcattttggtaagctc |
196 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10310418 |
ttgacagtccttcggaatcctatagcataaattcaaagacaaataaatacataaaactcccaaagagttcaaacacgcaagcattttggtaagctc |
10310513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 286 - 431
Target Start/End: Original strand, 10310603 - 10310748
Alignment:
| Q |
286 |
ataattaatgatgttaaaacggtaggctagtacctcattgacagaaactggagtgatggaccttatgtgagatgaaattggtaaaatattcagctcgtca |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10310603 |
ataattaatgatgttaaaacggtaggctagtacctcattgacagaaactggagtgatggaccttatgtgagatgaaattggtaaaatattcagctcgtca |
10310702 |
T |
|
| Q |
386 |
tccataaacacacaagccttgcaagaagcgagtgataataagaagc |
431 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10310703 |
tccatgaacacacaagccttgcaagaagcaagtgataataagaagc |
10310748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 38434794 - 38434840
Alignment:
| Q |
344 |
gaccttatgtgagatgaaattggtaaaatattcagctcgtcatccat |
390 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| || ||||| |
|
|
| T |
38434794 |
gaccttatgtgagatgaaattggtaatacattcagctcatcgtccat |
38434840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University