View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10410_low_2 (Length: 407)
Name: NF10410_low_2
Description: NF10410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10410_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 209 - 394
Target Start/End: Complemental strand, 20914858 - 20914672
Alignment:
| Q |
209 |
gctggttgtgcgtgtggctgctacctggttaggcagcagattactgctatagctttggttactgcagagttgttt-gtttgtgcgcaactgttgggggtt |
307 |
Q |
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| T |
20914858 |
gctggttgtgcgtgtggctgctacctggttaggcagcagattactgctatagctttggatgctgcagagttgttttgtttgtgcgcaactgttgggggtt |
20914759 |
T |
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| Q |
308 |
ctagagctgcagaattcgtggttgctggtgtgctttttgggggagtagctactgtgttctttttaactggtttttcggtttgttcct |
394 |
Q |
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| T |
20914758 |
ccagagctgcaaaattcgtggttgctggtgtgctttttgggggagcagctgctgtgttctttttaactggtttttcggtttgttcct |
20914672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 6699086 - 6699203
Alignment:
| Q |
273 |
cagagttgtttgtttgtgcgcaactgttgggggttctagagctgcagaattcgtggttgctggtgtgctttttgggggagtagctactgtgttcttttta |
372 |
Q |
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| T |
6699086 |
cagagttgtttgtttgtgcgcaactgttgggggttctagagctgcagaattcgtggctgctggtgtgcctttt-ggggagcagctgctgtgttcttttta |
6699184 |
T |
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| Q |
373 |
actggtttttcggtttgtt |
391 |
Q |
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| T |
6699185 |
actggtttttcggtttgtt |
6699203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 16965713 - 16965760
Alignment:
| Q |
8 |
tgaagtacaagacgtacatagttgagtatgacgtcgaggaggtgggta |
55 |
Q |
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| T |
16965713 |
tgaagtaccggacgtacatagttgagtatgacgtcgagcaggtaggta |
16965760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 16673169 - 16673227
Alignment:
| Q |
120 |
ttctgattttttgtagggtgttgtcatgttaccaaacatgtttgccaatgatttcagag |
178 |
Q |
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| T |
16673169 |
ttctgttttattttagggtgttgtcaagttaccaaacatgtttgcagctgatttcagag |
16673227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 17647537 - 17647595
Alignment:
| Q |
120 |
ttctgattttttgtagggtgttgtcatgttaccaaacatgtttgccaatgatttcagag |
178 |
Q |
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| T |
17647537 |
ttctgttttattttagggtgttgtcaagttaccaaacatgtttgcagctgatttcagag |
17647595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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