View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10411_high_2 (Length: 475)

Name: NF10411_high_2
Description: NF10411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10411_high_2
NF10411_high_2
[»] chr1 (9 HSPs)
chr1 (2-431)||(50391910-50392343)
chr1 (34-148)||(11199914-11200030)
chr1 (34-98)||(43834538-43834602)
chr1 (35-110)||(52551269-52551344)
chr1 (28-70)||(39030152-39030194)
chr1 (27-75)||(6356867-6356916)
chr1 (29-93)||(4392238-4392302)
chr1 (34-106)||(11766028-11766100)
chr1 (35-111)||(38637540-38637616)
[»] chr5 (6 HSPs)
chr5 (36-106)||(27856164-27856234)
chr5 (28-111)||(28296072-28296155)
chr5 (51-98)||(18415618-18415665)
chr5 (36-112)||(15159178-15159254)
chr5 (36-106)||(21488819-21488889)
chr5 (36-100)||(33244869-33244933)
[»] chr8 (5 HSPs)
chr8 (26-75)||(19263309-19263358)
chr8 (26-69)||(38291857-38291900)
chr8 (34-99)||(5073024-5073089)
chr8 (59-108)||(2372874-2372923)
chr8 (46-111)||(1418035-1418100)
[»] chr7 (6 HSPs)
chr7 (16-101)||(38116719-38116804)
chr7 (26-94)||(27938807-27938875)
chr7 (38-101)||(25078144-25078207)
chr7 (28-99)||(45100226-45100297)
chr7 (34-111)||(33730103-33730180)
chr7 (34-75)||(6677091-6677132)
[»] chr3 (10 HSPs)
chr3 (26-75)||(50435-50484)
chr3 (34-95)||(42059846-42059907)
chr3 (34-93)||(43978626-43978685)
chr3 (36-89)||(43407680-43407733)
chr3 (36-100)||(37626642-37626706)
chr3 (28-75)||(15863149-15863196)
chr3 (64-106)||(28979035-28979077)
chr3 (29-90)||(23161955-23162016)
chr3 (37-97)||(46954880-46954940)
chr3 (29-97)||(51677343-51677411)
[»] chr2 (7 HSPs)
chr2 (29-98)||(19548187-19548256)
chr2 (15-98)||(8252621-8252704)
chr2 (34-98)||(10066574-10066638)
chr2 (26-98)||(34217580-34217652)
chr2 (49-100)||(40732555-40732606)
chr2 (26-69)||(6467003-6467046)
chr2 (26-75)||(20444184-20444233)
[»] scaffold1743 (1 HSPs)
scaffold1743 (26-75)||(193-242)
[»] chr6 (3 HSPs)
chr6 (28-97)||(14221276-14221345)
chr6 (42-99)||(28940816-28940873)
chr6 (51-100)||(33424561-33424610)
[»] chr4 (6 HSPs)
chr4 (26-75)||(22681170-22681219)
chr4 (28-98)||(11307624-11307694)
chr4 (28-98)||(26986701-26986771)
chr4 (37-97)||(21748248-21748308)
chr4 (26-69)||(42756772-42756815)
chr4 (28-90)||(20090557-20090619)
[»] scaffold0548 (1 HSPs)
scaffold0548 (28-99)||(4113-4184)
[»] scaffold0039 (1 HSPs)
scaffold0039 (28-99)||(29063-29136)


Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 2 - 431
Target Start/End: Original strand, 50391910 - 50392343
Alignment:
Q  2 aatattcccgaagcataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttac 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50391910 aatattcccggagcataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttac 50392009  T
Q  102 acatttatagcaatgtgcgactaaacactcatacttaaaatccaacattttaccagagttctcaacgtgatattagaatcatataatatccaccatggat 201  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392010 acatttatagcaatgtgcgactaaccactcatacttaaaatccaacattttaccagagttctcaacgtgatattagaatcatataatatccaccatggat 50392109  T
Q  202 tctctaatgcataccttttaagatattatcatcctcttcattctatctttgttgttt----gctaccatttattctattgtttttcattcaatgaatgtt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||||    
T  50392110 tctctaatgcataccttttaagatattatcatcctcttcattctatctttgttgtttgctagctaccatttattctattctttttcattcaatgaatgtt 50392209  T
Q  298 ttctctaatatgaaaatatcatcaggatcatggatattgctctctcacatcaagaaactccacaataaataatattatgggtgttcaacaataagccttt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392210 ttctctaatatgaaaatatcatcaggatcatggatattgctctctcacatcaagaaactccacaataaataatattatgggtgttcaacaataagccttt 50392309  T
Q  398 ctagtgaaaggtttgttatgagtgatattgctat 431  Q
    ||||||||||||||||||||||||||||||||||    
T  50392310 ctagtgaaaggtttgttatgagtgatattgctat 50392343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 11200030 - 11199914
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttata-gcaatgtgcgac-taaacactc 131  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||  ||| ||| |||||||| ||| ||| |||||    
T  11200030 acatctccacccaaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactc 11199931  T
Q  132 atacttaaaatccaaca 148  Q
    | |||||||| ||||||    
T  11199930 acacttaaaacccaaca 11199914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 43834602 - 43834538
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 98  Q
    ||||||||||| ||||||||||||||||||||||||| ||| | | |||||||||| ||||||||    
T  43834602 acatctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatatattcaacattt 43834538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 52551344 - 52551269
Alignment:
Q  35 catctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttata 110  Q
    ||||| |||| |||| || ||| |||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||    
T  52551344 catcttcatctaaaatctcaaggcattagatatatgtgtcacatctctcatatatctaacattttacacatttata 52551269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 39030194 - 39030152
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatg 70  Q
    ||||| ||||||||| | |||||||||||||||||||||||||    
T  39030194 gacaccacatctccacctaaaaccttaagacattaggtatatg 39030152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 6356867 - 6356916
Alignment:
Q  27 tgacacgacatctccatccaaaacctt-aagacattaggtatatgagtca 75  Q
    |||||| ||||||||| |||||||||| ||||||| ||||||||||||||    
T  6356867 tgacaccacatctccacccaaaacctttaagacatgaggtatatgagtca 6356916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 4392238 - 4392302
Alignment:
Q  29 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaa 93  Q
    |||| |||||||||||||||| |||||| ||| ||||||||| ||| | | | ||||||||||||    
T  4392238 acaccacatctccatccaaaatcttaaggcatcaggtatatgggtctcctctgttatatatccaa 4392302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 11766028 - 11766100
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatt 106  Q
    ||||||||| ||||||||||||| ||||||||  ||  ||||  | ||||||| |||||||||||||| ||||    
T  11766028 acatctccacccaaaaccttaaggcattaggttaataggtcaactctcttataaatccaacattttacccatt 11766100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 38637616 - 38637540
Alignment:
Q  35 catctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 111  Q
    |||||||| |||| |||||||| ||||||||||||  ||||| |  |||||||  |||||||||||  |||||||||    
T  38637616 catctccacccaataccttaaggcattaggtatataggtcacctcacttatatggccaacattttatccatttatag 38637540  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 27856234 - 27856164
Alignment:
Q  36 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatt 106  Q
    ||||||| ||||||| ||||| ||||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  27856234 atctccacccaaaactttaaggcattaggtatatgagccacctctcttatatatccaacattttacccatt 27856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 28296072 - 28296155
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 111  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| ||||| | ||||||| || ||| ||||||| |||| ||||    
T  28296072 gacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctcttatacattcaatattttactcattcatag 28296155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 18415618 - 18415665
Alignment:
Q  51 cttaagacattaggtatatgagtcacatatcttatatatccaacattt 98  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||    
T  18415618 cttaagacattaggtttatgagtctcctatcttatatatccaacattt 18415665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 15159178 - 15159254
Alignment:
Q  36 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatagc 112  Q
    ||||||| ||||||| | || ||||||| |||||||||||||| ||||||| ||  |||||||||  ||||||||||    
T  15159178 atctccacccaaaacttcaaaacattagatatatgagtcacatctcttatacatgtaacattttatccatttatagc 15159254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 21488819 - 21488889
Alignment:
Q  36 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatt 106  Q
    ||||||| | |||| |||||||||| | || || | ||||||| |||||||||||||||||||||| ||||    
T  21488819 atctccaccaaaaatcttaagacatcaagtttaagggtcacatctcttatatatccaacattttactcatt 21488889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 33244933 - 33244869
Alignment:
Q  36 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttta 100  Q
    ||||| ||||||||| ||||   ||||  |||| || ||||||||||||||||||||||||||||    
T  33244933 atctctatccaaaactttaatgtattaaatatacgattcacatatcttatatatccaacatttta 33244869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 19263309 - 19263358
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 75  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  19263309 ttgacaccacatctccatcctaaaccttaagacattaggtatatgagtca 19263358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 38291900 - 38291857
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatat 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38291900 ttgacacgacatcttcatccaaaaccttaagacattaggtatat 38291857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 5073089 - 5073024
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 99  Q
    ||||||||| ||||||||||||| ||||| ||||||||| | | | ||||||||||||||||||||    
T  5073089 acatctccacccaaaaccttaaggcattacgtatatgagacgcctctcttatatatccaacatttt 5073024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 2372923 - 2372874
Alignment:
Q  59 attaggtatatgagtcacatatcttatatatccaacattttacacattta 108  Q
    |||| |||||||||||||||||||||||||||||||| | ||| ||||||    
T  2372923 attatgtatatgagtcacatatcttatatatccaacaatatacccattta 2372874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 1418035 - 1418100
Alignment:
Q  46 aaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 111  Q
    ||||| |||| ||||| | ||||||| ||| ||||||||||||||||| ||||||| |||| ||||    
T  1418035 aaaactttaaaacatttgatatatgaatcaaatatcttatatatccaatattttactcattcatag 1418100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 38116719 - 38116804
Alignment:
Q  16 ataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttac 101  Q
    |||| ||||| ||| || |||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||| |||| |||||||    
T  38116719 ataagagaggatgaaaccacatcttcatccaaaaccttaagacgttatgtatacgtgtcacatatcttatatagccaatattttac 38116804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 27938875 - 27938807
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaac 94  Q
    ||||||| |||||| |||||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  27938875 ttgacaccacatctacatccaaaaccttaaggctttaggtatatgagtctcctttcttatatatccaac 27938807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 25078207 - 25078144
Alignment:
Q  38 ctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttac 101  Q
    ||||| ||||||||||||||||||| |||||||| |||||| ||||||||||| | ||||||||    
T  25078207 ctccacccaaaaccttaagacattatgtatatgaatcacatctcttatatatcgatcattttac 25078144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 45100297 - 45100226
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 99  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||  | |||||||||| |||||||||    
T  45100297 gacaccacatctccatctaaaactttaagacattagttatatgagtcatctctcttatatattcaacatttt 45100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 33730103 - 33730180
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 111  Q
    ||||||||||||||||||||||  |||||| | |||| ||||| | |||| |||||||||||||| || |||| ||||    
T  33730103 acatctccatccaaaaccttaatgcattagctctatgggtcacctctcttttatatccaacatttaacccattcatag 33730180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 6677091 - 6677132
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtca 75  Q
    |||||| |||| |||||||||||||||| |||||||||||||    
T  6677091 acatcttcatctaaaaccttaagacatttggtatatgagtca 6677132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 50484 - 50435
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 75  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  50484 ttgacaccacatctccatcccaaaccttaagacattaggtatatgagtca 50435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 42059846 - 42059907
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaaca 95  Q
    ||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||| ||||    
T  42059846 acatctccatccaaaaccttaagacattaggtataagtgtcccctctcttatatatcaaaca 42059907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 43978626 - 43978685
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaa 93  Q
    ||||||||| ||||||||||||| || |||||||||||||| | | ||||||||||||||    
T  43978626 acatctccacccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaa 43978685  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 43407733 - 43407680
Alignment:
Q  36 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatat 89  Q
    ||||||| ||||||||||| | ||||||||||||||||||| | ||||||||||    
T  43407733 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatat 43407680  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 37626706 - 37626642
Alignment:
Q  36 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttta 100  Q
    ||||||| | |||| ||||||||||||||||||||  | || | |||||||||||||||||||||    
T  37626706 atctccacctaaaatcttaagacattaggtatatgtatgacctctcttatatatccaacatttta 37626642  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 15863196 - 15863149
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtca 75  Q
    |||||||| ||||||| |||||||||||||||||| ||||| ||||||    
T  15863196 gacacgacgtctccattcaaaaccttaagacattaagtatacgagtca 15863149  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 28979077 - 28979035
Alignment:
Q  64 gtatatgagtcacatatcttatatatccaacattttacacatt 106  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  28979077 gtatatgagtcacctctcttatatatccaatattttacacatt 28979035  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 23162016 - 23161955
Alignment:
Q  29 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatc 90  Q
    |||| ||||||||| |||||| |||||| |||  |||||||||||||| | |||||||||||    
T  23162016 acaccacatctccacccaaaatcttaaggcatcgggtatatgagtcacctctcttatatatc 23161955  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 46954880 - 46954940
Alignment:
Q  37 tctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 97  Q
    ||||| || ||||| |||| || ||| |||||||||| |||||||||||||||| ||||||    
T  46954880 tctccttctaaaactttaaaacgttaagtatatgagttacatatcttatatatcaaacatt 46954940  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 51677411 - 51677343
Alignment:
Q  29 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 97  Q
    |||| ||||||||| |||||||   ||||||||||||||||||||||  | | || |||||||||||||    
T  51677411 acaccacatctccacccaaaactccaagacattaggtatatgagtcatctcttttctatatccaacatt 51677343  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 19548256 - 19548187
Alignment:
Q  29 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 98  Q
    |||| ||||||||| |||||||||||||||||||| |||||| ||| | | |||||||||||||||||||    
T  19548256 acaccacatctccacccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacattt 19548187  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 8252621 - 8252704
Alignment:
Q  15 cataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 98  Q
    ||||| |||||  ||||| ||||||||||||||||| ||||| | ||||||||| |||| || | |||||||||||||||||||    
T  8252621 cataagagagggcgacaccacatctccatccaaaactttaaggcgttaggtatacgagttacctctcttatatatccaacattt 8252704  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 10066638 - 10066574
Alignment:
Q  34 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 98  Q
    ||||||||| |||||| |||||| |||||||||||||  || | |||||||||||||||||||||    
T  10066638 acatctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 34217652 - 34217580
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 98  Q
    ||||||| |||||||  ||||||||||||||   |||||||||| |||||| ||||||||||||||| |||||    
T  34217652 ttgacaccacatctcattccaaaaccttaaggagttaggtatataagtcacctatcttatatatccaccattt 34217580  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 40732555 - 40732606
Alignment:
Q  49 accttaagacattaggtatatgagtcacatatcttatatatccaacatttta 100  Q
    ||||||||||||||||||||| || ||| ||||||||||||| |||||||||    
T  40732555 accttaagacattaggtatataagccacttatcttatatatcaaacatttta 40732606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 6467046 - 6467003
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatat 69  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||    
T  6467046 ttgacaccacatctccatccaaaaacttaagacattagttatat 6467003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 20444233 - 20444184
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 75  Q
    ||||||| | |||| ||||| |||||||||| ||||||||||||||||||    
T  20444233 ttgacaccatatcttcatcctaaaccttaaggcattaggtatatgagtca 20444184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 193 - 242
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 75  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  193 ttgacaccacatctccatcctaaaccttaagacattagatatatgagtca 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 14221345 - 14221276
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 97  Q
    ||||| |||||||||||||||||||||| ||||||| |  ||||||||| | ||||||| ||||||||||    
T  14221345 gacaccacatctccatccaaaaccttaatacattagattaatgagtcacctctcttataaatccaacatt 14221276  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 28940816 - 28940873
Alignment:
Q  42 atccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 99  Q
    |||||||| |||||||||||||||||| ||||| | | |||||||| |||||||||||    
T  28940816 atccaaaatcttaagacattaggtatacgagtctcttctcttatatgtccaacatttt 28940873  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 33424561 - 33424610
Alignment:
Q  51 cttaagacattaggtatatgagtcacatatcttatatatccaacatttta 100  Q
    ||||||||||| |||||||||||||||| ||||||||||| | |||||||    
T  33424561 cttaagacatttggtatatgagtcacatctcttatatatctatcatttta 33424610  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 22681170 - 22681219
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 75  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||||    
T  22681170 ttgacaccacatctccaccctaaaccttaagacattaggtatatgagtca 22681219  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 11307624 - 11307694
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 98  Q
    ||||| ||||||||| ||||||| ||||||||| ||||||||| ||| | | ||| |||||||||||||||    
T  11307624 gacaccacatctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacattt 11307694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 26986701 - 26986771
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 98  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||| ||||  | ||| |||||| ||||||||    
T  26986701 gacaccacatctccatccaaaaccttaaggcattatgtatatgggtcatttttctaatatatacaacattt 26986771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 21748308 - 21748248
Alignment:
Q  37 tctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 97  Q
    |||||||||||||  ||||||||||||| ||||||||||| | | |||||||| |||||||    
T  21748308 tctccatccaaaattttaagacattaggcatatgagtcacgtcttttatatattcaacatt 21748248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 42756772 - 42756815
Alignment:
Q  26 ttgacacgacatctccatccaaaaccttaagacattaggtatat 69  Q
    ||||||| |||||| |||||||||||||||||| ||||||||||    
T  42756772 ttgacaccacatcttcatccaaaaccttaagactttaggtatat 42756815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 20090557 - 20090619
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatc 90  Q
    |||||||| || |||||||||||| |||  |||||||||||| |||||| | |||||||||||    
T  20090557 gacacgacgtcgccatccaaaaccctaatgcattaggtatataagtcacctctcttatatatc 20090619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 4113 - 4184
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 99  Q
    ||||| ||||||||| ||||||| ||||||||| ||||||||| ||| | | ||| ||||||||||||||||    
T  4113 gacaccacatctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacatttt 4184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 29136 - 29063
Alignment:
Q  28 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatat--ccaacatttt 99  Q
    ||||| ||||||||| |||||| |||||||||| || |||||||||| | | ||||||||||  ||||||||||    
T  29136 gacaccacatctccacccaaaatcttaagacatcagatatatgagtcccctctcttatatatatccaacatttt 29063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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