View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10411_high_3 (Length: 388)
Name: NF10411_high_3
Description: NF10411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10411_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 135 - 378
Target Start/End: Complemental strand, 20595279 - 20595036
Alignment:
| Q |
135 |
catttccctcattttggtcttcctctcccatgctaacaacattgcctactgggtactcaagcatgggaaggttcataactggccctcccacatttcctgc |
234 |
Q |
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| T |
20595279 |
catttccctcattttggtcttcctctcccatgctaacaacattgcctactgggtactcaagcatgggaaggttcataactggccctcccacatttcctgc |
20595180 |
T |
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| Q |
235 |
atcatcttctatttcctctatcacaactccaggatttggtatagggaaggcattggcttcatctaaagggtccagattagcaaagggttcatctgcagag |
334 |
Q |
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| T |
20595179 |
atcatctactatttcctctatcacaactctaggatttggtatagggaaggcattggcttcatctaaagggtccagattagcaaagggttcatctgcagag |
20595080 |
T |
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| Q |
335 |
tgtattacatacatatgaaccctattattctcttctgctctgtg |
378 |
Q |
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| T |
20595079 |
tgtattacatacatatgaaccctattattctcttctgctatgtg |
20595036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 20595435 - 20595276
Alignment:
| Q |
18 |
catccattacaatattctcttcattaatcacactgatgtccccaccatccaactcacattccacatcaccatgattgtccacatcaaaagtatttccctc |
117 |
Q |
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| T |
20595435 |
catccattacaatattctcttcattaaccacactgttgtccccaccatccaactcacattccacatcaccatgattctccacatcaaaagcatttccctc |
20595336 |
T |
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| Q |
118 |
attttcaaacactacatcatttccctcattttggtcttcctctcccatgctaacaacatt |
177 |
Q |
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| T |
20595335 |
attttcaaacactacatcatttccctcattttggtctgcctctcccatgccaataacatt |
20595276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 135 - 378
Target Start/End: Complemental strand, 8696225 - 8695982
Alignment:
| Q |
135 |
catttccctcattttggtcttcctctcccatgctaacaacattgcctactgggtactcaagcatgggaaggttcataactggccctcccacatttcctgc |
234 |
Q |
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| T |
8696225 |
catttccctcattttggtcttcctctcccatgctaacaacattgcctattgggtactcaagcatgggaaggttcataactggccctcccacatttcctgc |
8696126 |
T |
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| Q |
235 |
atcatcttctatttcctctatcacaactccaggatttggtatagggaaggcattggcttcatctaaagggtccagattagcaaagggttcatctgcagag |
334 |
Q |
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| T |
8696125 |
atcatctactacttcctctatcacaactccaggatttggtatagggaaggcattggcttcatctaaagggtccagattagcaaagggttcatctgcagag |
8696026 |
T |
|
| Q |
335 |
tgtattacatacatatgaaccctattattctcttctgctctgtg |
378 |
Q |
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| T |
8696025 |
tgtattacatacatatgaaccctattattctcttctgctatgtg |
8695982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 8696401 - 8696232
Alignment:
| Q |
16 |
cacatccattacaatattctcttcattaatcacactgatgtccccaccatccaactcacat------------------tccacatcaccatgattgtcc |
97 |
Q |
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| T |
8696401 |
cacatccattacaatattctcttcattaaccacattgttgtccccaccatccaactcacctcccacatcagcatgattctccacatcaccatgattctcc |
8696302 |
T |
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| Q |
98 |
acatcaaaagtatttccctcattttcaaacactacatcatttccctcattttggtcttcctctcccatgc |
167 |
Q |
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| T |
8696301 |
acatcaaaagcatttccctcattttcaaacactacatcatttccctcattttggtctgcatctcccatgc |
8696232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 37105400 - 37105447
Alignment:
| Q |
258 |
caactccaggatttggtatagggaaggcattggcttcatctaaagggt |
305 |
Q |
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| T |
37105400 |
caactccagcatttggtacaggaaagtcattggcttcatctaaagggt |
37105447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 20621127 - 20621057
Alignment:
| Q |
243 |
ctatttcctctatcacaactccaggatttggtatagggaaggcattggcttcatctaaagggtccagatta |
313 |
Q |
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| T |
20621127 |
ctatttcctccaacacaacaccaacatttggtacagggaagtcatttgcttcatctaaaggattcagatta |
20621057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 23329522 - 23329452
Alignment:
| Q |
243 |
ctatttcctctatcacaactccaggatttggtatagggaaggcattggcttcatctaaagggtccagatta |
313 |
Q |
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| T |
23329522 |
ctatttcctccaacacaacaccaacatttggtacagggaagtcatttgcttcatctaaaggattcagatta |
23329452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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