View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10411_high_5 (Length: 306)
Name: NF10411_high_5
Description: NF10411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10411_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 30265180 - 30264885
Alignment:
| Q |
1 |
aaatatattcaaatttgcaaattttatcttcttttttattttatgacaaaagaagaggtgtgagactatgtaaaacaaattatggaaatataatgaaatt |
100 |
Q |
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| T |
30265180 |
aaatatattcaaatttgcaaattttatcttcttttttattttaggacaaaagaagaggtgtgagactatgtaaaacaaattatggaaatataatgaaatt |
30265081 |
T |
|
| Q |
101 |
gtgctggcatgaatgtcacaccaggtgtgaggatccaatcaaattgtgctggcatgctataagtaagtacccagtg-------ccaacattgaaaataca |
193 |
Q |
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| T |
30265080 |
gtgctggcatgaatgtcacaccagatgtgaggatccaatcaaattgtgctggcatgctataagtaagtacccagtgccaagtgccaacattgaaaataca |
30264981 |
T |
|
| Q |
194 |
agtgcttagtgcatagtataatcaatggacaactttgaagatgtaactgagccagtaagtccaagtggacaatacttcaacacccctcccctatgt |
289 |
Q |
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| T |
30264980 |
agtgcttagtgcatagtataatcaatggacaactttgaagatctaactgagccagtaagtccaagtggacaatatttcaacacccctcccctatgt |
30264885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 30287008 - 30287303
Alignment:
| Q |
1 |
aaatatattcaaatttgcaaattttatcttcttttttattttatgacaaaagaagaggtgtgagactatgtaaaacaaattatggaaatataatgaaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287008 |
aaatatattcaaatttgcaaattttatcttcttttttattttaggacaaaagaagaggtgtgagactatgtaaaacaaattatggaaatataatgaaatt |
30287107 |
T |
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| Q |
101 |
gtgctggcatgaatgtcacaccaggtgtgaggatccaatcaaattgtgctggcatgctataagtaagtaccc-------agtgccaacattgaaaataca |
193 |
Q |
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| T |
30287108 |
gtgctggcatgaatgtcacaccagatgtgaggatccaatcaaattgtgctggcatgctataagtaagtacccagtgccaagtgccaacattgaaaataca |
30287207 |
T |
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| Q |
194 |
agtgcttagtgcatagtataatcaatggacaactttgaagatgtaactgagccagtaagtccaagtggacaatacttcaacacccctcccctatgt |
289 |
Q |
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| T |
30287208 |
agtgcttagtgcatagtataatcaatggacaactttgaagatctaactgagccagtaagtccaagtggacaatatttcaacacccctcccctatgt |
30287303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 30280114 - 30280393
Alignment:
| Q |
1 |
aaatatattcaaatttgcaaattttatcttcttttttattttatgacaaaagaagaggtgtgagactatgtaaaacaaattatggaaatataatgaaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30280114 |
aaatatattcaaatttgcaaattttatcttcttttttattttaggacaaaagaagaggtgtgagactatgtaaaacaaattatggaaatataatgaaatt |
30280213 |
T |
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| Q |
101 |
gtgctggcatgaatgtcacaccaggtgtgaggatccaatcaaattgtgctggcatgctataagtaagtaccc-------agtgccaacattgaaaataca |
193 |
Q |
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| T |
30280214 |
gtgctggcatgaatgtcacaccagatgtgaggatccaatcaaattgtgctggcatgctataagtaagtacccagtgccaagtgccaacattgaaaataca |
30280313 |
T |
|
| Q |
194 |
agtgcttagtgcatagtataatcaatggacaactttgaagatgtaactgagccagtaagtccaagtggacaatacttcaa |
273 |
Q |
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| T |
30280314 |
agtgcttagtgcatagtataatcaatggacaactttgaagatctaactgagccagtaagtccaagtggacaattcttcaa |
30280393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 30271882 - 30271810
Alignment:
| Q |
217 |
aatggacaactttgaagatgtaactgagccagtaagtccaagtggacaatacttcaacacccctcccctatgt |
289 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
30271882 |
aatggacaactttgaatatgtaaccgagccagtaagtccaagtggacaatacttcaacacaccacccctatgt |
30271810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 30304920 - 30304864
Alignment:
| Q |
217 |
aatggacaactttgaagatgtaactgagccagtaagtccaagtggacaatacttcaa |
273 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
30304920 |
aatggacaactttgaagatgtaacagagccagtaagtccaagtggacaattcttcaa |
30304864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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