View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10411_low_1 (Length: 506)
Name: NF10411_low_1
Description: NF10411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10411_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 39483810 - 39483304
Alignment:
| Q |
1 |
catacaccatgacatattgacacgataataatttgtaaaatgacacaattcacatttgttggtgtgtaca--------tatgtcggacaccaaacacgtc |
92 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||| |
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| T |
39483810 |
catacaccatgacatattgacacgataataatttgtaaaatgacacaattcacatttgttggtgcgtacacactgacatatgtcgcacaccagacacgtc |
39483711 |
T |
|
| Q |
93 |
ttcga----------ccaaaggtgaaaaacatcttaagaagaagaaagagaagggtttttagtattcaatttaagttttctaattctcaaaggatcacaa |
182 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39483710 |
ttcgatgaaaagtggccaagggtgaaaaacatcttaagaagaagaaagagaagggtttttagtattcaatttaagttttctaattctcaaaggatcacaa |
39483611 |
T |
|
| Q |
183 |
tccaaaccacagccacactgcggagattcaaagaaattatccaaaggaaaagccgcagaagcaacaccaacagagaaatcaagattatcacttttcctaa |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39483610 |
tccaaaccacagccacactgcggagattcaaagaaatcatccaaaggaaaagccgcagaagcaacaccaacagagaaatcaagattatcacttttcctaa |
39483511 |
T |
|
| Q |
283 |
caacttcaagaatattcacccagaagaacatcactttgacacttatacccctgagatcggtaagtctgttttccgttattttaccggtgatcgttgattt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39483510 |
caacttcaagaatattcacccagaagaacatcactttgacacttatacccctgagatcggtaagtctgttttccgttattttaccggtgatcgttgattt |
39483411 |
T |
|
| Q |
383 |
gtaactcaattgatacgaaccttgtaacgaaaaactgcacgaacggtttagatcagcgcggaaatttccacttgatttgtctaattcgtaattggttact |
482 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39483410 |
gtaactcaattgatacgaaccttgtaacgaaaaactgcacgaacgatttagatcagcgcggaaatttccacttgatttgtctaattcgtaattggttact |
39483311 |
T |
|
| Q |
483 |
cctattg |
489 |
Q |
| |
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||||||| |
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| T |
39483310 |
cctattg |
39483304 |
T |
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