View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10411_low_2 (Length: 503)

Name: NF10411_low_2
Description: NF10411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10411_low_2
NF10411_low_2
[»] chr8 (3 HSPs)
chr8 (1-254)||(14789288-14789539)
chr8 (350-484)||(14789055-14789186)
chr8 (428-484)||(29640107-29640163)
[»] chr2 (2 HSPs)
chr2 (1-254)||(2705544-2705795)
chr2 (350-484)||(2705899-2706033)
[»] chr5 (7 HSPs)
chr5 (167-242)||(22311520-22311595)
chr5 (422-489)||(22311022-22311089)
chr5 (171-241)||(24275945-24276015)
chr5 (171-241)||(24386198-24386268)
chr5 (167-242)||(36098571-36098646)
chr5 (422-484)||(36098086-36098148)
chr5 (3-56)||(22313671-22313724)
[»] scaffold0003 (4 HSPs)
scaffold0003 (167-242)||(208111-208186)
scaffold0003 (422-484)||(207626-207688)
scaffold0003 (167-242)||(213163-213238)
scaffold0003 (422-483)||(212679-212740)
[»] scaffold0077 (3 HSPs)
scaffold0077 (167-242)||(48549-48624)
scaffold0077 (167-242)||(58304-58379)
scaffold0077 (422-484)||(47666-47728)
[»] chr3 (1 HSPs)
chr3 (167-242)||(41931940-41932015)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 14789539 - 14789288
Alignment:
Q  1 ggactcgaaatgcaagaaaactaaggcaaaatatgagcatcaagcagagacaacaaannnnnnnnnnnnnnngaataacttagacagcaagaattgtctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||| ||| |||| |||| ||||||||||    
T  14789539 ggactcgaaatgcaagaaaactaaggcaaaatatgagcatcaagcagagacaacaa--gtttttttttttttgaagaacatagatagcaggaattgtctg 14789442  T
Q  101 aaagacgatcaaattacagtcagacgaaggacaaagataaacaagtggaaataacgagtgtcatagacagagagcacatgatgccatttcaggatttgac 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  14789441 aaagacgatcaaattacagtcagacgaaggataaagataaacaagtggaaataacgagtgtcatagactgagagcacatgatgccattttaggatttgac 14789342  T
Q  201 aaatttctatttagcattgtcacatgttcaagaaacacatgatgaggcttagtg 254  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||||||||||    
T  14789341 aaatttctattttgtattgtcacatgttcaaggaacacatgatgaggcttagtg 14789288  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 350 - 484
Target Start/End: Complemental strand, 14789186 - 14789055
Alignment:
Q  350 actgtctatattagaacttacagagcaacattttgactcatcatattctctaggaactcatatgaagcgagcatattctcaaggaactcataacaataga 449  Q
    ||||||||||||||||||||||||||| |||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789186 actgtctatattagaacttacagagcagcattttgattcat---attctctaggaactcatatgaagcgagcatattctcaaggaactcataacaataga 14789090  T
Q  450 gcggggtcaagtagaagaaatattgatgacactac 484  Q
    || ||| ||||||||||||||||||||||||||||    
T  14789089 gcagggccaagtagaagaaatattgatgacactac 14789055  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 29640163 - 29640107
Alignment:
Q  428 tcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactac 484  Q
    ||||| ||||||| |||||  |||||| | |||||||||||||| ||||||||||||    
T  29640163 tcaagaaactcatgacaatgaagcgggattaagtagaagaaatagtgatgacactac 29640107  T

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Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 2705544 - 2705795
Alignment:
Q  1 ggactcgaaatgcaagaaaactaaggcaaaatatgagcatcaagcagagacaacaaannnnnnnnnnnnnnngaataacttagacagcaagaattgtctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||                ||| ||| ||||||||||||||||||||    
T  2705544 ggactcgaaatgcaagaaaactaaggcaaaatatgagcatcaagcaaagacaacaa--gattttttttttttgaagaacatagacagcaagaattgtctg 2705641  T
Q  101 aaagacgatcaaattacagtcagacgaaggacaaagataaacaagtggaaataacgagtgtcatagacagagagcacatgatgccatttcaggatttgac 200  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  2705642 aaagacgatcgaattacagtcatacgaaggacaaagataaacaagtggaaataacgaatgtcatagacggagagcacatgatgccatttcaggatttgac 2705741  T
Q  201 aaatttctatttagcattgtcacatgttcaagaaacacatgatgaggcttagtg 254  Q
    |||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  2705742 aaatatctattttgcattgtcacatgttcaaggaacacatggtgaggcttagtg 2705795  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 350 - 484
Target Start/End: Original strand, 2705899 - 2706033
Alignment:
Q  350 actgtctatattagaacttacagagcaacattttgactcatcatattctctaggaactcatatgaagcgagcatattctcaaggaactcataacaataga 449  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  2705899 actgtctatattagaacttactgagcagcattttgattcatcatattctctaggaactcatatgaagcggccatattctcaaggaactcataacaataga 2705998  T
Q  450 gcggggtcaagtagaagaaatattgatgacactac 484  Q
    |||||| |||||||||||||||||||| |||||||    
T  2705999 gcggggccaagtagaagaaatattgataacactac 2706033  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 22311595 - 22311520
Alignment:
Q  167 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 242  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| |||||||||||||| |||||||||    
T  22311595 acagagatcacatgatgccatttaatgatttgacaaatttaaattttacatcgtcacatgttcaaggaacacatga 22311520  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 489
Target Start/End: Complemental strand, 22311089 - 22311022
Alignment:
Q  422 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactactgatg 489  Q
    ||||| ||||||||||||| |||||  ||||||  ||||||||||||||| |||||||||||| ||||    
T  22311089 atattttcaaggaactcatgacaatgaagcgggaccaagtagaagaaatagtgatgacactacagatg 22311022  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 24276015 - 24275945
Alignment:
Q  171 agagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatg 241  Q
    ||||| ||||||||||||||| ||||||||||||||  |||  |  |||||||||||||||| ||||||||    
T  24276015 agagcccatgatgccatttcaagatttgacaaatttaaattgtgtgttgtcacatgttcaaggaacacatg 24275945  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 24386198 - 24386268
Alignment:
Q  171 agagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatg 241  Q
    ||||| ||||||||||||||| ||||||||||||||  |||  |  |||||||||||||||| ||||||||    
T  24386198 agagcccatgatgccatttcaagatttgacaaatttaaattgtgtgttgtcacatgttcaaggaacacatg 24386268  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 36098646 - 36098571
Alignment:
Q  167 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 242  Q
    ||||||| |||||||||| |||| | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  36098646 acagagatcacatgatgctatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 36098571  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 36098148 - 36098086
Alignment:
Q  422 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactac 484  Q
    ||||| |||||||||| || |||||  ||||||  ||||||||||||||| ||||||||||||    
T  36098148 atattttcaaggaactaatgacaatgaagcgggaccaagtagaagaaatagtgatgacactac 36098086  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 22313724 - 22313671
Alignment:
Q  3 actcgaaatgcaagaaaactaaggcaaaatatgagcatcaagcagagacaacaa 56  Q
    |||| |||||||||||| |  |||||||||||||||| |||||| |||||||||    
T  22313724 actcaaaatgcaagaaatcggaggcaaaatatgagcaccaagcaaagacaacaa 22313671  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 208186 - 208111
Alignment:
Q  167 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 242  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  208186 acagagatcacatgatgccatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 208111  T

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Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 207688 - 207626
Alignment:
Q  422 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactac 484  Q
    ||||| ||||||||||||| |||||  ||||||  ||||||||||||||| ||||||||||||    
T  207688 atattttcaaggaactcatgacaatgaagcgggaccaagtagaagaaataatgatgacactac 207626  T

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Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 213238 - 213163
Alignment:
Q  167 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 242  Q
    ||||||| ||||||||||||| | | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  213238 acagagatcacatgatgccatctaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 213163  T

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Target: scaffold0003; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 483
Target Start/End: Complemental strand, 212740 - 212679
Alignment:
Q  422 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacacta 483  Q
    ||||| ||||||||||||| |||||  ||||||  ||||||||||||||| | |||||||||    
T  212740 atattttcaaggaactcatgacaatgaagcgggaccaagtagaagaaatagttatgacacta 212679  T

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Target: scaffold0077 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 48624 - 48549
Alignment:
Q  167 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 242  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||  |||||||| |||||||||    
T  48624 acagagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatga 48549  T

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Target: scaffold0077; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 58379 - 58304
Alignment:
Q  167 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 242  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||  |||||||| |||||||||    
T  58379 acagagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatga 58304  T

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Target: scaffold0077; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 47728 - 47666
Alignment:
Q  422 atattctcaaggaactcataacaatagagcggggtcaagtagaagaaatattgatgacactac 484  Q
    ||||| ||||||||||||| |||||  |||||   ||||||||||||||| ||||||||||||    
T  47728 atattttcaaggaactcatgacaatgaagcggaaccaagtagaagaaatagtgatgacactac 47666  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 41931940 - 41932015
Alignment:
Q  167 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 242  Q
    ||||||| ||||||||||||| | | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  41931940 acagagatcacatgatgccatgtaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 41932015  T

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