View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10412_2 (Length: 347)
Name: NF10412_2
Description: NF10412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10412_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 40676112 - 40675766
Alignment:
| Q |
1 |
ctatcaactaatttgactataaaatttaggttatatcaatgacaaattagtgactagttattggaaaattatacctctaatgttataaataaattaatag |
100 |
Q |
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| T |
40676112 |
ctatcaactaatttgactataaaatttaggttatatcaatgacaaattagtgactagttattggcaaattatacctctaatgttataaataaattaatag |
40676013 |
T |
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| Q |
101 |
atggactgttttgaatgacatttacaatttcaagatgtatttaccaattcacaaaagtaagacactatttcaaccactgcttacaaattctagaactaat |
200 |
Q |
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| T |
40676012 |
atggactgttttgaatgacatttacaatttcaagatgtatttaccaattcacaaaagtaagacactatttcaaccaatgcttacaaattctagaactaat |
40675913 |
T |
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| Q |
201 |
ttgcatatttaatcatagctatacacaacaaattctaaatcgtaactaacatatattctttcaacgatttttcccagtaactaacctgaggcaaaggaag |
300 |
Q |
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| T |
40675912 |
ttgcatatttaatcatagctatacacaacaaattctaaatcgtaactaacatatattctttcaacgatttttcccagtaactaacctgaggcaaaggaag |
40675813 |
T |
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| Q |
301 |
ggtggcaagaagatcaataatgaaatcatgcctgatatatcggcggg |
347 |
Q |
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| T |
40675812 |
ggtggcaagaagatcaataatgaaatcatgcttgatatatcggcggg |
40675766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10096876 - 10096829
Alignment:
| Q |
1 |
ctatcaactaatttgactataaaatttaggttatatcaatgacaaatt |
48 |
Q |
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| T |
10096876 |
ctatcaactaatttgcctataaaatttaggtcatatcagtgacaaatt |
10096829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 31586141 - 31586077
Alignment:
| Q |
94 |
ttaatagatggactgttttgaatgaca-tttacaatttcaa-gatgtatttaccaattcacaaaa |
156 |
Q |
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| T |
31586141 |
ttaatagatggactattttgactgaaactttacaatttcaatgatgtatttaccaattctcaaaa |
31586077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 40179093 - 40179134
Alignment:
| Q |
230 |
aaattctaaatcgtaactaacatatattctttcaacgatttt |
271 |
Q |
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| T |
40179093 |
aaattataaatcataactaacatatgttctttcaacgatttt |
40179134 |
T |
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