View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10413_3 (Length: 607)
Name: NF10413_3
Description: NF10413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10413_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 23 - 607
Target Start/End: Complemental strand, 42154643 - 42154061
Alignment:
| Q |
23 |
tatttctctgctgttcaatatcagaaaggcttagagcatctccttgaatcagataaatttgtcggtatcgaccatacacagtaagcaaattaagaacaca |
122 |
Q |
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| T |
42154643 |
tatttctctgctgttcaatatcagaaaggcttagagcatctccttgaatcagataaatttgtcggtatcgaccgtacacggtaagcaaattaagaacaca |
42154544 |
T |
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| Q |
123 |
tccaatatcataaccagatatccaaatcctcataggccaaacaggtttctccctctttgaaataaccaaagtgaaagttgaaatgattatttggacaatc |
222 |
Q |
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| T |
42154543 |
tccaatatcataaccagatatccaaatcctcataggccaaacaggtttctccctctttgaaataaccaaagtgaaagttgaaatgattatttggataatc |
42154444 |
T |
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| Q |
223 |
aaagcaataaactccatcatcaaccatgtgctagaattaaaaggattagagccaaggttagaccttgatccattttgataatggaaaactcttcttaaca |
322 |
Q |
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| T |
42154443 |
aaagcaataaattccatcatcaaccatgtgctagaattgaaaggattagagccaaggttagaccttgatccattttgataatggaaaactcttcttaaca |
42154344 |
T |
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| Q |
323 |
aggtaaaccatcttgatctagatattcttcgacatccgtcctaaccgaaaacgaaggcgacgaagcatgttgaggcctatttctagaactaactactctt |
422 |
Q |
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| T |
42154343 |
aggtaaaccatcttgatctagatattct--catagccatcctaaccgaaaacgaaggcgacgaagcatgttgaggcctatttctagaactaactactctt |
42154246 |
T |
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| Q |
423 |
tcttctcttgtttcagaatttgaagaagattgaactatgctgttagagttcaacaaacacctagaattcattgaannnnnnnctcttttgaaattatatc |
522 |
Q |
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| T |
42154245 |
tcttctcttgtttcagaatttgaagaagattgaactatgctgttagagttcaacaaacacctagaattcattgaatttttttctcttttgaaattatatc |
42154146 |
T |
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| Q |
523 |
aagctnnnnnnnnnctttccaattcatgaacaaaagaggaagtgtttataggaagaggaaaaagggaagaagggtgtgaaggata |
607 |
Q |
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| T |
42154145 |
aagctaaaaaaaaactttccaattcatgaacaaaagaggaagtgtttataggaagaggaaaaagggaagaagggtgtgaaggata |
42154061 |
T |
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