View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10413_5 (Length: 372)

Name: NF10413_5
Description: NF10413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10413_5
NF10413_5
[»] chr7 (13 HSPs)
chr7 (15-372)||(4863251-4863608)
chr7 (32-371)||(4697610-4697943)
chr7 (177-372)||(4784394-4784589)
chr7 (177-372)||(4816823-4817018)
chr7 (176-371)||(4846579-4846774)
chr7 (177-371)||(4712625-4712819)
chr7 (185-368)||(4661170-4661353)
chr7 (185-368)||(4666301-4666484)
chr7 (187-368)||(4630275-4630456)
chr7 (185-371)||(4643067-4643253)
chr7 (187-372)||(4652882-4653067)
chr7 (176-368)||(4636223-4636415)
chr7 (185-368)||(4672006-4672189)
[»] chr4 (1 HSPs)
chr4 (175-372)||(18926296-18926493)
[»] chr6 (1 HSPs)
chr6 (313-371)||(5479305-5479363)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Complemental strand, 4863608 - 4863251
Alignment:
Q  15 aaccatagttatcgtcgttgttgttgtagtttcatgtcttatgctagcatctgttattggagtgatagtttttgttagaagaagaagaagatttgaatct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863608 aaccatagttatcgtcgttgttgttgtagtttcatgtcttatgctagcatctgttattggagtgatagtttttgttagaagaagaagaagatttgaatct 4863509  T
Q  115 catgttgaagaaatggatgaaagctcatggacaaaaaagaaagaaggcgaagtttcatcgtctttaccatcccatttgtgccgctattttacaataacag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863508 catgttgaagaaatggatgaaagctcatggacaaaaaagaaagaaggcgaagtttcatcgtctttaccatcccatttgtgccgctattttacaataacag 4863409  T
Q  215 agataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtacaaaggttatattgatggagacatacctgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863408 agataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtacaaaggttatattgatggagacatacctgt 4863309  T
Q  315 tgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863308 tgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgag 4863251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 32 - 371
Target Start/End: Original strand, 4697610 - 4697943
Alignment:
Q  32 ttgttgttgtagtttcatgtcttatgctagcatctgttattg---gagtgatagtttttgttagaagaagaagaagatttgaatctcatgttgaagaaat 128  Q
    ||||||||||||||||||||||  ||||||||| |||| |||   || | ||||||| || |||||| ||||||||| ||||||||||| |||||   ||    
T  4697610 ttgttgttgtagtttcatgtctcttgctagcatttgttgttgtgggaatcatagtttatgctagaaggagaagaagacttgaatctcatattgaa---at 4697706  T
Q  129 ggatgaaagctcatggacaaaaaagaaagaaggcgaagtttcatcgtctttaccatcccatttgtgccgctattttacaataacagagataagagctgct 228  Q
    ||| ||||| |||||||  | ||  ||||||||      ||| ||  ||||||||||||||||||||||||||||||||||| | ||||||||||| |||    
T  4697707 ggaagaaagttcatggaggacaagaaaagaagg------ttcgtcaactttaccatcccatttgtgccgctattttacaatagcggagataagagccgct 4697800  T
Q  229 acaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtc 328  Q
    ||||||||||| || |||||||| |||||||||||||||||||| || ||||||| ||||||||| || |||| ||  | |||||| || |||||||||     
T  4697801 acaaacaacttcgaagatatttttatcattggagttggagggtttggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtt 4697900  T
Q  329 ttaaaccaggttctcaacaaggtataaatgagttcatgaatga 371  Q
    | ||||| ||||||||||||||| |||| ||||||||||||||    
T  4697901 tgaaaccgggttctcaacaaggtgtaaacgagttcatgaatga 4697943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 177 - 372
Target Start/End: Original strand, 4784394 - 4784589
Alignment:
Q  177 tttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggc 276  Q
    |||||||||||||||||||||||||||||||||| | || |||| ||| |||||||||||||| || |||||||| ||||| || |||||||||||||||    
T  4784394 tttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggc 4784493  T
Q  277 aacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgag 372  Q
    || |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||    
T  4784494 aatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaaccaggttctcaacaaggtgtgaacgagttcttgaatgag 4784589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 177 - 372
Target Start/End: Original strand, 4816823 - 4817018
Alignment:
Q  177 tttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggc 276  Q
    |||||||||||||||||||||||||||||||||| | || |||| ||| |||||||||||||| || |||||||| ||||| || |||||||||||||||    
T  4816823 tttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggc 4816922  T
Q  277 aacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgag 372  Q
    || |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||| ||||||||||||||| | || |||||| ||||||||    
T  4816923 aatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaacctggttctcaacaaggtgttaacgagttcttgaatgag 4817018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 176 - 371
Target Start/End: Original strand, 4846579 - 4846774
Alignment:
Q  176 ctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcgg 275  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||  |||||||||||||| || |||||||| |||||||||| ||||||||||||    
T  4846579 ctttaccgtcccatttgtgccgctattttacaatagcggagataagagaagctacaaacaacttcgaagatatttttatcattggagctggagggttcgg 4846678  T
Q  276 caacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatga 371  Q
    |||||||||||||||||| ||  |||||  || |||||||||||||||||||| |||||| ||||||| | ||||| ||||||| |||||||||||    
T  4846679 caacgtgtacaaaggttacatcaatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgataaggtctaaatgaattcatgaatga 4846774  T

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Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 177 - 371
Target Start/End: Original strand, 4712625 - 4712819
Alignment:
Q  177 tttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggc 276  Q
    |||||||||||||||||| || | |||||| |||   || |||||||| |||||||||||||| || |||||||| ||||| || |||||||| ||||||    
T  4712625 tttaccatcccatttgtgtcgatgttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggc 4712724  T
Q  277 aacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatga 371  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||| ||||   ||||||| ||||||| ||||||| |||||||||||    
T  4712725 aacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatga 4712819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 185 - 368
Target Start/End: Complemental strand, 4661353 - 4661170
Alignment:
Q  185 cccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgta 284  Q
    |||||||||||||||| ||||||||  ||||||| ||||| || ||||| |||||||| |||  |||||||||||||||||||||||| |||||||||||    
T  4661353 cccatttgtgccgctactttacaattgcagagatcagagcagccacaaaaaactttgatgatgatttcatcattggagttggagggtttggcaacgtgta 4661254  T
Q  285 caaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaa 368  Q
    |||||||| | ||||||||   | || ||||||||| ||||| || ||| | || |||||||||||| | || |||||||||||    
T  4661253 caaaggttgtgttgatggatcaacacttgttgcgattaaacgcctcaaatcgggctctcaacaaggtgtcaacgagttcatgaa 4661170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 368
Target Start/End: Complemental strand, 4666484 - 4666301
Alignment:
Q  185 cccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgta 284  Q
    ||||||||||||| |  ||||||||  ||||||| ||||| || ||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||    
T  4666484 cccatttgtgccggtcctttacaattgcagagatcagagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttggcaacgtgta 4666385  T
Q  285 caaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaa 368  Q
    |||||||| | | ||||||  || || |||||| |||||||| || ||| |||| ||||||||||||   || |||||||||||    
T  4666384 caaaggttgtgtcgatggatccacacttgttgccataaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaa 4666301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 4630456 - 4630275
Alignment:
Q  187 catttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtaca 286  Q
    |||||||| ||||| ||||||||  | ||||| | ||| || ||||||||||||||| ||  ||||||||| ||| |||||||||| || ||||||||||    
T  4630456 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacaatgatttcatcatcggatttggagggtttgggaacgtgtaca 4630357  T
Q  287 aaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaa 368  Q
    |||||| | | ||||||  || |||||||||||||||||| || ||| |||| ||||||||||||   || |||||||||||    
T  4630356 aaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaa 4630275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 371
Target Start/End: Complemental strand, 4643253 - 4643067
Alignment:
Q  185 cccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgta 284  Q
    ||||| |||||||||  ||||||||  ||||||| | ||| |||||||||||||| || |||  ||| ||||| |||||||||||||| |||||||||||    
T  4643253 cccatctgtgccgctcctttacaatcgcagagatcaaagcagctacaaacaacttcgatgatgcttttatcatcggagttggagggtttggcaacgtgta 4643154  T
Q  285 caaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatga 371  Q
    |||||||| | ||||||||  || || ||||||| | || || || ||| | || ||||||||||||   || ||||||||||||||    
T  4643153 caaaggttgtgttgatggatccacacttgttgcggttaagcgcctcaaatcgggctctcaacaaggtgccaacgagttcatgaatga 4643067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 372
Target Start/End: Complemental strand, 4653067 - 4652882
Alignment:
Q  187 catttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtaca 286  Q
    |||||||| ||||  || |||||  ||||||| | ||| || ||||| ||||| || ||| |||||||||| || |||||||| || |||||||||||||    
T  4653067 catttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtaca 4652968  T
Q  287 aaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgag 372  Q
    ||||||  || ||||||  ||| ||||||||||||||||| || ||| | || ||||||||||||   || |||||||||||||||    
T  4652967 aaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaacgagttcatgaatgag 4652882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 368
Target Start/End: Complemental strand, 4636415 - 4636223
Alignment:
Q  176 ctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcgg 275  Q
    ||||||||||| ||||||||||||| ||||||||  ||||||| ||||| || ||||| ||||| || |||     ||| || || ||||| ||||| ||    
T  4636415 ctttaccatcctatttgtgccgctactttacaatcgcagagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgg 4636316  T
Q  276 caacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaa 368  Q
     || |||||||||||||  |||||||||  || ||| |||||||||||||| || |   | || ||||||||||||  |||||||||||||||    
T  4636315 gaatgtgtacaaaggtttcattgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgcaaatgagttcatgaa 4636223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 368
Target Start/End: Complemental strand, 4672189 - 4672006
Alignment:
Q  185 cccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgta 284  Q
    |||| |||||||| |  ||||||||  ||||||| | ||| || ||||||||||| || |||  ||  ||||| |||||||||||||| || ||| ||||    
T  4672189 cccacttgtgccgttcctttacaatcgcagagatcaaagcagccacaaacaacttcgatgatgcttctatcatcggagttggagggtttggaaacctgta 4672090  T
Q  285 caaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaa 368  Q
    |||||||| | | ||||||  || || |||||| |||||||| || ||| | || ||||| ||||||   || |||||||||||    
T  4672089 caaaggttgtgtcgatggatccacacttgttgccataaaacggctcaaatcgggctctcagcaaggtgccaacgagttcatgaa 4672006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 372
Target Start/End: Original strand, 18926296 - 18926493
Alignment:
Q  175 tctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcg 274  Q
    ||||||||  |||||||||||||||| ||||||||  ||||||||| ||| || ||||| |||||||| |||  ||| ||||| |||||||||||||| |    
T  18926296 tctttaccgccccatttgtgccgctactttacaattgcagagataaaagcagccacaaataactttgatgatgatttaatcatcggagttggagggtttg 18926395  T
Q  275 gcaacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgag 372  Q
    |||||||||| |||||||  || |||  |  || ||| ||||| ||||||||||| |||||||| |||||||||||    || |||||||||||||||    
T  18926396 gcaacgtgtataaaggtttcatcgataaatccacacccgttgcaataaaacgtctcaaaccaggctctcaacaaggggccaacgagttcatgaatgag 18926493  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 5479305 - 5479363
Alignment:
Q  313 gttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatga 371  Q
    ||||| |||||||| |||||||| ||||| |||||||||  |||||||||||| |||||    
T  5479305 gttgcaataaaacggcttaaaccgggttcacaacaaggtgaaaatgagttcatcaatga 5479363  T

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