View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10413_low_1 (Length: 350)

Name: NF10413_low_1
Description: NF10413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10413_low_1
NF10413_low_1
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-333)||(164966-165298)
scaffold0002 (240-306)||(165283-165349)
[»] chr6 (4 HSPs)
chr6 (1-333)||(14248428-14248760)
chr6 (170-333)||(14316990-14317165)
chr6 (32-147)||(14317161-14317276)
chr6 (240-306)||(14248377-14248443)
[»] scaffold0902 (2 HSPs)
scaffold0902 (1-322)||(3543-3867)
scaffold0902 (240-306)||(3466-3532)
[»] scaffold1652 (2 HSPs)
scaffold1652 (69-319)||(1-263)
scaffold1652 (238-333)||(263-358)
[»] scaffold1176 (3 HSPs)
scaffold1176 (240-333)||(46-139)
scaffold1176 (58-172)||(1206-1320)
scaffold1176 (240-306)||(124-190)
[»] chr4 (1 HSPs)
chr4 (2-189)||(37245288-37245478)


Alignment Details
Target: scaffold0002 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 164966 - 165298
Alignment:
Q  1 taaccctaatattcccattctcgttcatctttctactatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  164966 taaccctaatattcccattctcgttcatctttctactatggcttcttctcactcggctgtgttgatgcttttcgttgcactgtttctgagttccgctgtt 165065  T
Q  101 gctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcacaagtggcgtcttctccggtacctctga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  165066 gctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctga 165165  T
Q  201 atagtgctccctctccttcaccgtctgcttcctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactat 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165166 atagtgctccctctccttcaccgtctgctttctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactat 165265  T
Q  301 ttctcctcctgctgctgctccttctgtgactcc 333  Q
    |||||||||||||||||||||| ||||||||||    
T  165266 ttctcctcctgctgctgctcctgctgtgactcc 165298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 165283 - 165349
Alignment:
Q  240 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc 306  Q
    ||||||||||  ||||||  | ||||||||| |||||||||||||||||||||||| | ||||||||    
T  165283 ctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc 165349  T

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Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 14248760 - 14248428
Alignment:
Q  1 taaccctaatattcccattctcgttcatctttctactatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  14248760 taaccctaatattcccattctcgttcatctttctactatggcttcttctcactcggctgtgttgatgcttttcgttgcactgtttctgagttccgctgtt 14248661  T
Q  101 gctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcacaagtggcgtcttctccggtacctctga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14248660 gctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctga 14248561  T
Q  201 atagtgctccctctccttcaccgtctgcttcctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactat 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248560 atagtgctccctctccttcaccgtctgctttctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactat 14248461  T
Q  301 ttctcctcctgctgctgctccttctgtgactcc 333  Q
    |||||||||||||||||||||| ||||||||||    
T  14248460 ttctcctcctgctgctgctcctgctgtgactcc 14248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 170 - 333
Target Start/End: Complemental strand, 14317165 - 14316990
Alignment:
Q  170 tcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgc------------tgtcgctccat 257  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||    
T  14317165 tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccat 14317066  T
Q  258 cctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctccttctgtgactcc 333  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  14317065 catggatctctaccccaccatctcaaggaccatcgcctactatttctccttctgctgctgctcctgatgtgactcc 14316990  T

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Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 14317276 - 14317161
Alignment:
Q  32 tctactatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtctt 131  Q
    |||||||||||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  14317276 tctactatggcttcttccaaaacagctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcacccaagtctt 14317177  T
Q  132 ctccgtttccatcacc 147  Q
    ||||||||||||||||    
T  14317176 ctccgtttccatcacc 14317161  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 14248443 - 14248377
Alignment:
Q  240 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc 306  Q
    ||||||||||  ||||||  | ||||||||| |||||||||||||||||||||||| | ||||||||    
T  14248443 ctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc 14248377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 3867 - 3543
Alignment:
Q  1 taaccctaatattcccattctcgttcatctttctactatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgtt 100  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| ||||||||||| |||    
T  3867 taaccctaattttcctattctccttcatctttctactatggcttcttccaaaaccgctgtgttgatgcttttggttgcactgttgctgagttccgccgtt 3768  T
Q  101 gctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcacaagtggcgtcttctccggtacctctga 200  Q
    ||| |||||         |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3767 gctagatca---------tcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctctga 3677  T
Q  201 atagtgctccctctccttcaccgtctgcttcctctggtt------------ctcctgctgtcgctccatcctggatctctacccctccatctcaaggacc 288  Q
    |||||||||||||| |||||||  ||||||| |||||||            ||||||||||| ||||||| | |||||||| ||||||| |||||| |||    
T  3676 atagtgctccctcttcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtcactccatcgtcgatctctatccctccaactcaagcacc 3577  T
Q  289 atcgcctactatttctcctcctgctgctgctcct 322  Q
    ||||||||| |||| | ||||  |||||||||||    
T  3576 atcgcctacaatttttactccctctgctgctcct 3543  T

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Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 3532 - 3466
Alignment:
Q  240 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc 306  Q
    ||||||||||  ||||||| | ||||||||| ||||||||||||| |||| ||||| | ||||||||    
T  3532 ctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctcc 3466  T

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Target: scaffold1652 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 69 - 319
Target Start/End: Original strand, 1 - 263
Alignment:
Q  69 ttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctga 168  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  1 ttttggttgcactgtttctgagttccgccgttgctagatcaccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctga 100  T
Q  169 ctcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggtt------------ctcctgctgtcgctcca 256  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||| ||| | || ||||||| |||||||            ||||||||||| |||||    
T  101 ctcaccagtggcgtctcctccggtaactgtgaatagtgctccctcttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctcca 200  T
Q  257 tcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgct 319  Q
    || | ||||||||| ||||||||||||| |||||||||||| |||||| ||||| ||||||||    
T  201 tcgtcgatctctactcctccatctcaagtaccatcgcctacgatttcttctcctcctgctgct 263  T

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Target: scaffold1652; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 263 - 358
Alignment:
Q  238 ttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctccttctgtgactcc 333  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| ||||||||||    
T  263 ttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttctcctcttgctgccgctcctgctgtgactcc 358  T

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Target: scaffold1176 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 46 - 139
Alignment:
Q  240 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctccttctgtgactcc 333  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46 ctcctgttgtcgatccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctcctgctgtgactcc 139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 172
Target Start/End: Original strand, 1206 - 1320
Alignment:
Q  58 tgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttct 157  Q
    |||||||||||||||||||||||||||||| |||| | | ||||||  ||||||| || |||||||| ||||||||||||||||||| ||||| ||||||    
T  1206 tgtgttgatgcttttggttgcactgtttctaagtttcaccgttgcttaatcaccatcaacatcccccaagtcttctccgtttccatctcctgcgatttct 1305  T
Q  158 ccctccgctgactca 172  Q
    ||||| ||| |||||    
T  1306 ccctcagctaactca 1320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 124 - 190
Alignment:
Q  240 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc 306  Q
    ||||||||||  ||||||| | ||||||||| ||||||||||||| |||||||||| | ||||||||    
T  124 ctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttctcc 190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 37245478 - 37245288
Alignment:
Q  2 aaccctaatattcccattctcgttc---atctttctactatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctg 98  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||| |   |||||| |||| |||||||||||||||||||| | |||  |||| | |    
T  37245478 aaccctaatattcccattctccttcttcatctttctactatggcttcct---acaccgttgtgctgatgcttttggttgcactgctgctggattccacag 37245382  T
Q  99 ttgctcgatcaccaccatcatc--ccccca-gtcttctccgtttccatcacctgctatttctccctccgctgactcacaagtggcgtcttctcc 189  Q
    ||||||||||||||||||||||  | |||| || ||||||||||||||||||    ||||||||||||||| |||||| |||||| ||| ||||    
T  37245381 ttgctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcc 37245288  T

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