View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10414_1 (Length: 775)
Name: NF10414_1
Description: NF10414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10414_1 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 84 - 669
Target Start/End: Complemental strand, 5081209 - 5080620
Alignment:
| Q |
84 |
cagctgttttatttaagtta--caactagccacacaagcaattttttgcatccctcttcaaaataaattatcttgggtggaaagacgatgttggacgcaa |
181 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5081209 |
cagctgttttatttaagttatacaactagccacacaagcaaatttttgcatccctcttcaaaataaattatcttgggtggaaagacggtgttggacgcaa |
5081110 |
T |
|
| Q |
182 |
caaacggttatatattaatccccaagcaagcagcggaatctttaacataaccaaactgtttcaaatgaccttatatgaaaaggattctaccatatcttta |
281 |
Q |
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||||| |||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5081109 |
caaacagttatatattaatccctaaacaagcagaggaatctttaacgtaaccaaactgtttcaaatgaccttatataaaaaggattctaccatatcttta |
5081010 |
T |
|
| Q |
282 |
aaattaaatatcaactcataaacatctttaactaaaatatataccattaaaattaagatctcaagttcaagtatcttccatattatct----tgtaaaag |
377 |
Q |
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|||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
5081009 |
aaattaggtatcaactcataaacatctttaactaaatcatg--ccattaaaattaagatctcaagttcaagtatcttccatattatctatcttataaaag |
5080912 |
T |
|
| Q |
378 |
aatgttggacaataaaactttacactcattcgtcaaatcaacctccaaagtaaataaatttcttatccaactccaataacatccctcaagtctagtacca |
477 |
Q |
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|| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5080911 |
aacgttggactataaaactttacactcattcatcaaatcaacctccaaagtaaataaatttcttatccaactccaacaacatccctcaagtctagtacca |
5080812 |
T |
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| Q |
478 |
taaatcatatccttcacaatgtgtaaacaatttttacaaatctttg-aggttagttcgatcatttgagacccgtaccaaaaatgatttacatccttcttt |
576 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5080811 |
taaatcatatccttcgcaatgtgtaaacaatttttacaaatctttgaaggttagttcgatcatttgagacccgtaccaaaaatgatttacatccttcttt |
5080712 |
T |
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| Q |
577 |
gaaagaatttgaactctgtctcttgaagttattacaaagtcaaacaattataattattaacaagttgacacattgtaaaatattttattaata |
669 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5080711 |
gaaagaatttgaactctctctcttgaagctattacaaagtcaaacaattataa-tattaacaagttgacacattgtaaaatattttattaata |
5080620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 669 - 757
Target Start/End: Complemental strand, 5080595 - 5080507
Alignment:
| Q |
669 |
agagatactcatttcttttatatgacatgttgcccccaaagacataggatggtgataatgagctttagtgaagttggagtccattgatg |
757 |
Q |
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| T |
5080595 |
agagatactcatttcttttatatgacatgttgcccccaaagacataggatggtgataatgagctttagtgaagttggagtccattgatg |
5080507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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