View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10414_3 (Length: 344)

Name: NF10414_3
Description: NF10414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10414_3
NF10414_3
[»] chr4 (2 HSPs)
chr4 (10-252)||(34344082-34344325)
chr4 (126-193)||(18913128-18913195)
[»] chr6 (1 HSPs)
chr6 (29-245)||(3017805-3018022)
[»] chr5 (2 HSPs)
chr5 (125-253)||(37278612-37278740)
chr5 (10-57)||(37278504-37278551)
[»] chr7 (2 HSPs)
chr7 (150-252)||(46420229-46420331)
chr7 (14-58)||(46420152-46420196)
[»] chr8 (1 HSPs)
chr8 (245-344)||(40178837-40178936)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 34344325 - 34344082
Alignment:
Q  10 gcagagagtacagaccatttgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaagtacccaccacacacgttatctttcctt 109  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||             |||||||||| || |||| |||||||||||||||||||    
T  34344325 gcagagagtacagaccatttgtttactttttcactattttattgcttaatttttatttttttattgaaacaaatatccacaacacacgttatctttcctt 34344226  T
Q  110 cannnnnnnn-ggattcattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacaca 208  Q
    ||         |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34344225 catttttttttggattcattgatttggtggaccatacaaatacacacattagaacattttattttatcacttgttatctctccaaagtccaaagaacaca 34344126  T
Q  209 agtccaaaactcataaagcttaccattcttccttcttccttctt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34344125 agtccaaaactcataaagcttaccattcttccttcttccttctt 34344082  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 18913128 - 18913195
Alignment:
Q  126 attgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaa 193  Q
    ||||| |||||||||| |||||||||||| ||  |||| || | ||||| ||||||||||||||||||    
T  18913128 attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaa 18913195  T

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Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 29 - 245
Target Start/End: Complemental strand, 3018022 - 3017805
Alignment:
Q  29 tgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaagtacccaccacacacgttatctttccttcannnnnnnng-gattcat 127  Q
    ||||||||||||||||||||||||||||||             |||||||||| |||||||||||||| ||||||||||||||          |||||||    
T  3018022 tgtttactttttcactcctttattacttaatttttatttttttattgaaacaaatacccaccacacacattatctttccttcattttttttttgattcat 3017923  T
Q  128 tgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagc 227  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3017922 tgatttggtggaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagc 3017823  T
Q  228 ttaccattcttccttctt 245  Q
    ||||||||||||||||||    
T  3017822 ttaccattcttccttctt 3017805  T

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Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 37278612 - 37278740
Alignment:
Q  125 cattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataa 224  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37278612 cattgatttggtggatcatacaaatacacacattacaacattttcttttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa 37278711  T
Q  225 agcttaccattcttccttcttccttcttt 253  Q
    ||||| |||||||||||| ||||||||||    
T  37278712 agcttgccattcttcctttttccttcttt 37278740  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 37278504 - 37278551
Alignment:
Q  10 gcagagagtacagaccatttgtttactttttcactcctttattactta 57  Q
    ||||||||| || ||||||||||||||||||||||| |||||| ||||    
T  37278504 gcagagagtgcaaaccatttgtttactttttcactcttttattgctta 37278551  T

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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 46420229 - 46420331
Alignment:
Q  150 acacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 249  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46420229 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 46420328  T
Q  250 ctt 252  Q
    |||    
T  46420329 ctt 46420331  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 46420152 - 46420196
Alignment:
Q  14 agagtacagaccatttgtttactttttcactcctttattacttaa 58  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  46420152 agagtacataccatttgtttactttttcactcctttattgcttaa 46420196  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 40178837 - 40178936
Alignment:
Q  245 tccttctttggaagttcattcattagagtaaaagcacannnnnnngctatatgaatgaatgaaagtatctcatctttcattctcatttctcaaagtttag 344  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40178837 tccttctttggaagttcattcattagagtaaaagcacatttttttgctatatgaatgaatgaaagtatctcatctttcattctcatttctcaaagtttag 40178936  T

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