View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10414_low_1 (Length: 274)
Name: NF10414_low_1
Description: NF10414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10414_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 3017554 - 3017791
Alignment:
| Q |
17 |
actaaacgagtaagctaaataatagatggcttaacatgaacaaaagaacacaacaatggagctgcaaactccggcacggtggctatgtatgattgcatgg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3017554 |
actaaacgagtaagctaaataatagatggcttaacatgaacaaaa---cacaacaatggagctgcaaactccggcacggtggctatgtatgattgcacgg |
3017650 |
T |
|
| Q |
117 |
cggcggggaaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaagaaaacgatcttattttg |
216 |
Q |
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| T |
3017651 |
cggcggggaaatgggtcacgaaaaaaattgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaagaaaacgatcttattttg |
3017750 |
T |
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| Q |
217 |
tttgatcagtgaaaatggggctcagattcgcacctaaaatg |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017751 |
tttgatcagtgaaaatggggctcagattcgcacctaaaatg |
3017791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 46420586 - 46420345
Alignment:
| Q |
17 |
actaaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggtggctatgtatgattgcatg |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || | |
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| T |
46420586 |
actaaacgagtaagctaaataattgatggcttaacatgaacaaagagaacacaacaatggagctgcaaactccggcgcggtggctatgtatgattacacg |
46420487 |
T |
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| Q |
116 |
gcggcggggaaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaagaaaacgatcttatttt |
215 |
Q |
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| T |
46420486 |
gcggcggggaaatgggtcacgaaaaaaattgtcctttggtgaaactaaagggaccaatagaaagctcttgttgaggggatgaagaaaacgatcttatttt |
46420387 |
T |
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| Q |
216 |
gtttgatcagtgaaaatggggctcagattcgcacctaaaatg |
257 |
Q |
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| T |
46420386 |
ctttgatcagtgaaaatggggctcagattcgcacctaaaatg |
46420345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 34343826 - 34344068
Alignment:
| Q |
17 |
actaaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggtggctatgtatgattgcatg |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||| ||||||||||||||| |
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| T |
34343826 |
actaaatgagtaagctaaataatagatggcttaacatgaacaaagagaacacaatgatggagctgcaaactctggcgcggtgactatgtatgattgcaca |
34343925 |
T |
|
| Q |
116 |
gcggcgggg-aaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaagaaaacgatcttattt |
214 |
Q |
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||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34343926 |
gcggcgggggaaatgggtcacgaaaaaaattgtcctttggtgaaactaaagggaccaatagaaagctattgttgaggggatgaagaaaacgatcttattt |
34344025 |
T |
|
| Q |
215 |
tgtttgatcagtgaaaatggggctcagattcgcacctaaaatg |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344026 |
tgtttgatcagtgaaaatggggctcagattcgcacctaaaatg |
34344068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 37279059 - 37278818
Alignment:
| Q |
19 |
taaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggtggctatgtatgattgcatggc |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| || |
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| T |
37279059 |
taaatgagtaagctaaataatagatggcttaacatgaacaaagagaacacaacaatggagctgcaaactccggagccgtggctatgtatgattgcaccgc |
37278960 |
T |
|
| Q |
118 |
ggcgggg--aaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaagaaaacgatcttatttt |
215 |
Q |
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|||||| |||||||||||| | || | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
37278959 |
agcgggggaaaatgggtcacgcaaaaaaatttcatgtggtgaaactaaagggaccaatagaaagctctcgttgaggggatgaagaaaacgatcttacttt |
37278860 |
T |
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| Q |
216 |
gtttgatcagtgaaaatggggctcagattcgcacctaaaatg |
257 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
37278859 |
gtttgatcagtgaaaatggggctcaaatttgcaccaaaaatg |
37278818 |
T |
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