View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10414_low_2 (Length: 265)
Name: NF10414_low_2
Description: NF10414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10414_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 34344069 - 34344263
Alignment:
| Q |
1 |
gtggttcggttaaaagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggacattggagagataacaagtgataaaataaa |
100 |
Q |
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| T |
34344069 |
gtggttcggttgtaagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaa |
34344168 |
T |
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| Q |
101 |
atgttgaaatgtgtgtatttgtatggtccaccaaatcaatgaatcc-nnnnnnnntgaaggaaagataacgtgtgtggtgggtacttgtttcaat |
194 |
Q |
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| T |
34344169 |
atgttctaatgtgtgtatttgtatggtccaccaaatcaatgaatccaaaaaaaaatgaaggaaagataacgtgtgttgtggatatttgtttcaat |
34344263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 18913195 - 18913128
Alignment:
| Q |
73 |
ttggagagataacaagtgataaaataaaatgttgaaatgtgtgtatttgtatggtccaccaaatcaat |
140 |
Q |
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| T |
18913195 |
ttggagagataacaagtggtaaaagataaggttgtgatatgtgtatttgtaaggtccaccaactcaat |
18913128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 3017805 - 3017979
Alignment:
| Q |
21 |
aagaaggaagaatggtaagctttatgagttttggacttgtgttctttggacattggagagataacaagtgataaaataaaatgttgaaatgtgtgtattt |
120 |
Q |
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| T |
3017805 |
aagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaaatgttgtaatgtgtgtattt |
3017904 |
T |
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| Q |
121 |
gtatggtccaccaaatcaatgaatc-cnnnnnnnntgaaggaaagataacgtgtgtggtgggtacttgtttcaat |
194 |
Q |
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| T |
3017905 |
gtatggtccaccaaatcaatgaatcaaaaaaaaaatgaaggaaagataatgtgtgtggtgggtatttgtttcaat |
3017979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 37278740 - 37278612
Alignment:
| Q |
13 |
aaagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggacattggagagataacaagtgataaaataaaatgttgaaatgt |
112 |
Q |
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| T |
37278740 |
aaagaaggaaaaaggaagaatggcaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaagaaaatgttgtaatgt |
37278641 |
T |
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| Q |
113 |
gtgtatttgtatggtccaccaaatcaatg |
141 |
Q |
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| T |
37278640 |
gtgtatttgtatgatccaccaaatcaatg |
37278612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 46420344 - 46420229
Alignment:
| Q |
1 |
gtggttcggttaaaagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggacattggagagataacaagtgataaaataaa |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46420344 |
gtggttcggttataagaaggaagaaggaagaatggtaagctttatgagttttggacttgtgttctttggactttggagagataacaagtgataaaataaa |
46420245 |
T |
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| Q |
101 |
atgttgaaatgtgtgt |
116 |
Q |
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| T |
46420244 |
atgttgtaatgtgtgt |
46420229 |
T |
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