View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10416_high_5 (Length: 281)
Name: NF10416_high_5
Description: NF10416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10416_high_5 |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 5705 - 5955
Alignment:
| Q |
15 |
acagatatctgtagtcacaagaatatataggacacatcttcattagatagttaaaatttatattcctaaccaaataatataactgaaccatgtaataata |
114 |
Q |
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| T |
5705 |
acagatatctgtagtcacaagaatatataggacacatcttcattagatagttgaaatttatattcctaaccaaataatataactgaaccatataataata |
5804 |
T |
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| Q |
115 |
tggccaaacaatagcattcaacgaacattttccactaaaaagtgaagttattccttttataaggggaggggtgtttcaggggctttcctttaattagaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5805 |
tggccaaacaatagcattcaacgaacattttccactaaaaagtgaagttattccttttataaggggaggggtgtttcaggggctttcctttaattagaaa |
5904 |
T |
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| Q |
215 |
gggataaatgaagtgattgttataaatgaacaaacaaagatacaaataaat |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5905 |
gggataaatgaagtgattgttataaatgaacaaacaaagatacaaataaat |
5955 |
T |
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