View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10416_low_1 (Length: 502)
Name: NF10416_low_1
Description: NF10416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10416_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 27786375 - 27785927
Alignment:
| Q |
18 |
agaccctcattagagtgaattgaagaaatctaaaatattcccttttcttgttttctctctgcctaagcaaattcatggaagatcactgctaataattgtt |
117 |
Q |
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| T |
27786375 |
agaccctcattagagtgaattgaagcaatctaaaatattcccttttctcgttttctctctgcgtaagcaaattcatggaagatcactgctaataattgtt |
27786276 |
T |
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| Q |
118 |
gcctacgtaaatagttttcttcatccaagtctaattctataagactataaccaaaccccactaattcaaaaaatttattttccattcattacttctttaa |
217 |
Q |
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| T |
27786275 |
gcctacgtaaatagttttcttcatccaagtctaattctataagactatagccaaaccccactaattcgaaaactttattttccattcattacttctttaa |
27786176 |
T |
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| Q |
218 |
ttgacctaatttatcacctcttgttattactagcactttgctaacttaatcctgatctaaaaataaaatgcagtaacgnnnnnnncttttgtgaagaaac |
317 |
Q |
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| T |
27786175 |
ttgacctaatttatcacctcttgttattactagcactttgctaacttaatcctgatctaaaaataaaatgcagtaacgtttttttcttttgtgaagaaac |
27786076 |
T |
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| Q |
318 |
tattgtttttaatcgatgtcacatatatgtttgatggggaagaagaaggtgggttgaagaagatgagaatgtgaaaggattcaggtgatagagtgtggaa |
417 |
Q |
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| T |
27786075 |
tattgtttttaatcgatgtcacatatatgtttgatggggaagaagaaggtgggttgaagaagatgagaatgtgaaaggattcaggtgatagagtgtggaa |
27785976 |
T |
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| Q |
418 |
agacacatgtaataattaaaattagacttttaatctcaaccatgtattt |
466 |
Q |
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| T |
27785975 |
agacacatgtaatgattaaaattagacttttaatctcaatcatgtattt |
27785927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 367 - 466
Target Start/End: Original strand, 27786483 - 27786582
Alignment:
| Q |
367 |
tgggttgaagaagatgagaatgtgaaaggattcaggtgatagagtgtggaaagacacatgtaataattaaaattagacttttaatctcaaccatgtattt |
466 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
27786483 |
tgggttgaagaagaagagaatgtgaaaggtttcaggtgatagagtgtggaaagacacatgtaatgattaaaattgaacttttaatctcaaccatgtattt |
27786582 |
T |
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