View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10416_low_3 (Length: 315)
Name: NF10416_low_3
Description: NF10416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10416_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 49433002 - 49433285
Alignment:
| Q |
19 |
cctgcagacctcagttttgtagcgtgggtggcggatcactgggcgaagctccccaatgccatgagcgaattgacagtggtctccataagggcatgtgcca |
118 |
Q |
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| T |
49433002 |
cctgcagacctcagttttgtagcgtgggtggcggatcactgggcgaagctccccaatgccatgagcgaattgacagtggtctccataagggcatgtgcca |
49433101 |
T |
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| Q |
119 |
gtttcctgccatttgttacagagctcagtcttgaacatcccctggttgtacacaaccatctcaagaggctcttcctctttctgccctcctcgcacaaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49433102 |
gtttcctgccatttgttacagagctcagtcttgaacatcccctggttgtacacaaccatctcaagaggctcttcctctttctgccctcctcgcacaaata |
49433201 |
T |
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| Q |
219 |
ccttttgctgcaagcatagtaacacaaaatttcaacaataatcaattcttccgaatatcaacaatcaaatctatatgatgtcca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49433202 |
ccttttgctgcaagcatagtaacacaaaatttcaacaataatcaattcttccgaatatcaacaatcaaatctatataatgtcca |
49433285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 39170796 - 39170897
Alignment:
| Q |
19 |
cctgcagacctcagttttgtagcgtgggtggcggatcactgggcgaagctccccaatgccatgagcgaattgacagtggtctccataagggcatgtgcca |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||| | |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
39170796 |
cctgcagacctcagttttgtagcgtggatggcggatcatttggcgaagctctccaatgccgtgagcaaattgacagtggtctccataagggcatgtgcca |
39170895 |
T |
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| Q |
119 |
gt |
120 |
Q |
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|| |
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| T |
39170896 |
gt |
39170897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 39170894 - 39170934
Alignment:
| Q |
144 |
cagtcttgaacatcccctggttgtacac-aaccatctcaag |
183 |
Q |
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| T |
39170894 |
cagtcttgaacatcccctggttgtacacaaaccatctcaag |
39170934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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