View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10416_low_4 (Length: 296)
Name: NF10416_low_4
Description: NF10416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10416_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 19685852 - 19686129
Alignment:
| Q |
1 |
ttagtgcacactgcgcactttatattgaaaggcttcaaaatctgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacat |
100 |
Q |
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| T |
19685852 |
ttagtgcacactgcgcactttatattgaaaggcttcaaaatctgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacat |
19685951 |
T |
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| Q |
101 |
tcccaaagggaccaaccaagtgctactcaggggcaagtttaataaggttgctttggccattactaatgctttatgcagtaaaaatgtacaggtatgtgca |
200 |
Q |
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| T |
19685952 |
tcccaatgggaccaatcaagtgctactcaggggaaagtttaataaggttgctttggccattactaatgctttatgcagtaaaaatgtacaggtatgtgcg |
19686051 |
T |
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| Q |
201 |
tacatacatatctgttatctcctttatttatacgctaaaatttcaatattccatgaatgataatctaaagcacaagat |
278 |
Q |
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| T |
19686052 |
tacatacataactgttatctcctttatttataagctaaaattgcaatattccatgaatgataatctaaagcacaagat |
19686129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 19628771 - 19628574
Alignment:
| Q |
3 |
agtgcacactgcgcactttatattgaaaggcttcaaaatctgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacattc |
102 |
Q |
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| T |
19628771 |
agtgcacactgcgcagtttatattgaaaggcttccaaatctgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacattc |
19628672 |
T |
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| Q |
103 |
ccaaagggaccaaccaagtgctactcaggggcaagtttaataaggttgctttggccattactaatgctttatgcagtaaaaatgtacaggtatgtgca |
200 |
Q |
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| T |
19628671 |
ccaaagggaccaatcaagtgctactcaggggcaagtttaataaggttgctttggccattattaatgctttatgcagtaaaaatgtacaggtatgtgca |
19628574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 35356725 - 35356926
Alignment:
| Q |
5 |
tgcacactgcgcactttatattgaaaggcttcaaaatctgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacattccc |
104 |
Q |
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| T |
35356725 |
tgcacactgtgaactttatattggaaggttaccacaattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacatcccc |
35356824 |
T |
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| Q |
105 |
aaagggaccaaccaagtgctactcaggggcaagtttaataaggttgctttggccattactaatgctttatgcagtaaaaatgtacaggtatgtgcataca |
204 |
Q |
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| T |
35356825 |
aaagggacaaatcaagtgcttcttcgaggcaagttcaataaggttgcgtttgccattgctaatgctttatgcagaaaaaatgtacaggtatgtgcacaca |
35356924 |
T |
|
| Q |
205 |
ta |
206 |
Q |
| |
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|| |
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| T |
35356925 |
ta |
35356926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 35381976 - 35382131
Alignment:
| Q |
43 |
tgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacattcccaaagggaccaaccaagtgctactcaggggcaagtttaa |
142 |
Q |
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| T |
35381976 |
tgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaagttcaa |
35382075 |
T |
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| Q |
143 |
taaggttgctttggccattactaatgctttatgcagtaaaaatgtacaggtatgtg |
198 |
Q |
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| T |
35382076 |
taaggttgcgtttgccattgctaatgctttatgcaagaaaaatgtgcaggtatgtg |
35382131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 35371987 - 35372144
Alignment:
| Q |
43 |
tgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacattcccaaagggaccaaccaagtgctactcaggggcaagtttaa |
142 |
Q |
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||||||| |||||||||||||| |||||| ||| || ||| |||||| | |||||||||||||||||||| || |||||||| || | |||||||| || |
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| T |
35371987 |
tgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaagttcaa |
35372086 |
T |
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| Q |
143 |
taaggttgctttggccattactaatgctttatgcagtaaaaatgtacaggtatgtgca |
200 |
Q |
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| T |
35372087 |
taaggttgcgtttgtcatcgctaatgctttatgcaagaaaaatgtacaggtaagtgca |
35372144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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