View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10417_high_2 (Length: 378)
Name: NF10417_high_2
Description: NF10417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10417_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 2622322 - 2622687
Alignment:
| Q |
1 |
aagaaaggaagaatggtgattaatgtgggtatatgtaaagatggtgaggtcagtgaaccttgattgtaaattgtgattgattaatgttaggttcatgtct |
100 |
Q |
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| T |
2622322 |
aagaaaggaagaatggtgattaatgtgggtatatgtaaagatggtgaggtcagtgaaccttgattgtaaattgtgattgattaatgttaggttcatgtct |
2622421 |
T |
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| Q |
101 |
atattaattctttgtttttatttcttcatttattgagtctaaatgtgaaattttgtcattttccctaaaatgggatggggtgtggaaacaagtgtgggca |
200 |
Q |
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| T |
2622422 |
atattaattctttgtttttatttcttcatttattgagtctaaatgtgaaattttgtcattttccctaaaatgggatggggtgtggaaacaagtgtgggca |
2622521 |
T |
|
| Q |
201 |
caaaatttgtagtttatagtc-atatttgatacagattgtaatttaatttactgaaataaaggagaagttcaatttgtaatttactactccttggagatc |
299 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622522 |
caaaatttgtagtttatagtcaatatttgatacagattgtaatttaatttactgaaataaaggagaagttcaatttgtaatttactactccttggagatc |
2622621 |
T |
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| Q |
300 |
attatttgcttcttcatatttcagataccatgcttgtacaaaaataaattagatgggagaataaat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622622 |
attatttgcttcttcatatttcagataccatgcttgtacaaaaataaattagatgggagaataaat |
2622687 |
T |
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