View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10417_high_3 (Length: 370)
Name: NF10417_high_3
Description: NF10417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10417_high_3 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 111218 - 111568
Alignment:
| Q |
7 |
tttatgtggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgaatattattgttg |
106 |
Q |
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| T |
111218 |
tttatgtggtgatgatgcttataattccttcggtgatgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtgaatattattgttg |
111317 |
T |
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| Q |
107 |
ccacgagaaataatgttgatatatcatcaactgggatactatttgtaaacatctatagtaaaggtgtataagcttgctttgtggtgcgtatttgatgtaa |
206 |
Q |
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| T |
111318 |
ccacgagaaataatgttgatatatcatcaactgggatactatttataaacatatatcgtaaaggtgtataagcttgctttgtggtgcgtatttgatgtaa |
111417 |
T |
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| Q |
207 |
tatctttgttaaattgctagcaccttgtgagttttgcttgtcctcttgaattttgcttgttgctgtttgtttaatcactgtattgaggaattagttttgg |
306 |
Q |
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| T |
111418 |
tatctttgttaaattgctagcaccttgtgagttttgcttgtcctcttgaattttgcttgttgctgtttgtttaatcactgtattgaggaattagttttgg |
111517 |
T |
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| Q |
307 |
cactacctgcggctgtggcaattgttataagtctgcagttttttgtggtct |
357 |
Q |
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| T |
111518 |
cactacctgcggctgtggcaattgttataagtctgcagttttttgtggtct |
111568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 145 - 353
Target Start/End: Complemental strand, 20645655 - 20645451
Alignment:
| Q |
145 |
ctatttgtaaacatctatagtaaaggtgtataagcttgctttgtggtgcgtatttgatgtaatatctttgttaaattgctagcaccttgtgagttttgct |
244 |
Q |
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| T |
20645655 |
ctatttgtaaacatctatagtaaaggt----aagcttgctttgtggtgcgtatttgatgtaatatctttgttaaattgctagcaccttgtgagttttgct |
20645560 |
T |
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| Q |
245 |
tgtcctcttgaattttgcttgttgctgtttgtttaatcactgtattgaggaattagttttggcactacctgcggctgtggcaattgttataagtctgcag |
344 |
Q |
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| T |
20645559 |
tgtcctcttgaattttgcttgttgctgtttgtttaatcactgtattgaggaattagttttggcactacctgcggctgtggcaattgttataagtctgcag |
20645460 |
T |
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| Q |
345 |
ttttttgtg |
353 |
Q |
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| T |
20645459 |
ttttttgtg |
20645451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 20646648 - 20646506
Alignment:
| Q |
7 |
tttatgtggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgaatattattgttg |
106 |
Q |
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| T |
20646648 |
tttatgtggtgatgatgcttataattccttcggtgatgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtgaatattattgttg |
20646549 |
T |
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| Q |
107 |
ccacgagaaataatg-ttgatatatcatcaactgggatactat |
148 |
Q |
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| T |
20646548 |
ccacgagaaataatgtttgatatatcatcaactgggatactat |
20646506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 1503 - 1590
Alignment:
| Q |
14 |
ggtgatgatgcttataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgaatattat |
101 |
Q |
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| T |
1503 |
ggtgatgatgattatctttcctttgctgctgagagtgtttttgtaaaatctggaagattataaggagctgctatgtggtgaatattat |
1590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 1648 - 1684
Alignment:
| Q |
156 |
catctatagtaaaggtgtataagcttgctttgtggtg |
192 |
Q |
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| T |
1648 |
catctataataaaggtgtataagcttgctttatggtg |
1684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 51168625 - 51168686
Alignment:
| Q |
123 |
tgatatatcatcaactgggatactatttgtaaacatctatagtaaaggtgtataagcttgct |
184 |
Q |
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| T |
51168625 |
tgatatatcatcaattatgatactatttgtgaccatttatagtaaagttgtataaggttgct |
51168686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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