View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10418_high_1 (Length: 713)

Name: NF10418_high_1
Description: NF10418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10418_high_1
NF10418_high_1
[»] chr7 (1 HSPs)
chr7 (1-703)||(37187979-37188683)
[»] chr4 (11 HSPs)
chr4 (245-495)||(53492262-53492512)
chr4 (563-700)||(53498908-53499045)
chr4 (317-495)||(53498648-53498826)
chr4 (563-692)||(53492603-53492732)
chr4 (285-495)||(53494630-53494840)
chr4 (293-495)||(52590372-52590574)
chr4 (347-492)||(53489552-53489697)
chr4 (591-695)||(53494978-53495082)
chr4 (591-697)||(53489331-53489437)
chr4 (306-495)||(53501759-53501949)
chr4 (627-703)||(53502110-53502186)
[»] chr8 (4 HSPs)
chr8 (302-483)||(35016252-35016433)
chr8 (594-703)||(35017724-35017833)
chr8 (293-493)||(42990650-42990850)
chr8 (597-700)||(42991060-42991163)
[»] chr2 (4 HSPs)
chr2 (380-497)||(16941461-16941578)
chr2 (380-497)||(17012126-17012243)
chr2 (594-697)||(16942130-16942233)
chr2 (594-697)||(17012795-17012898)
[»] chr3 (4 HSPs)
chr3 (302-493)||(38214692-38214883)
chr3 (594-700)||(38214366-38214472)
chr3 (594-700)||(38218585-38218691)
chr3 (302-471)||(38218935-38219104)


Alignment Details
Target: chr7 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Original strand, 37187979 - 37188683
Alignment:
Q  1 tgggtgggcatccacctataccaaatccaaccatgcctttactttacccactcctcattcctcaccaactttcaacaccccatactatatcttcaattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37187979 tgggtgggcatccacctataccaaatccaaccatgcctttactttacccactcctcattcctcaccaactttcaacaccccatactatatcttcaattga 37188078  T
Q  101 accttcttgtaactttcctttctttt-gcaccctaaaccctataaataccttgccattcttccaaaatatcacaatccatcaacattcaactttctcact 199  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37188079 accttcttgtaactttcctttctttttgcaccctaaaccctataaataccttgccattcttccaaaatatcacaatccatcaacattcaactttctcact 37188178  T
Q  200 atatatataaaaatccattagctttctatggcattttcaagagttacattcctagtcattttaatctctacggttgcaattgcctcagctggcaattttt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37188179 atatatataaaaatccattagctttctatggcattttcaagagttacattcctagtcattttaatctctacggttgcaattgcctctgctggcaattttt 37188278  T
Q  300 atcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37188279 atcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttt 37188378  T
Q  400 tcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcctattatgtaagcaca 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37188379 tcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcctattatgtaagcaca 37188478  T
Q  500 tattcaaatattcatcc-tttactttataatatttttatctaattggaatctttatgctcaatcaattcagctatcatcaaaaggtggtgcatgggatga 598  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37188479 tattcaaatattcatccttttactttataatatttttaactaattggaatctttatgctcaattaattcagctatcatcaaaaggtggtgcatgggatga 37188578  T
Q  599 aattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaattctac 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37188579 aattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaattctac 37188678  T
Q  699 ctatg 703  Q
    |||||    
T  37188679 ctatg 37188683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 245 - 495
Target Start/End: Original strand, 53492262 - 53492512
Alignment:
Q  245 acattcctagtcattttaatctctacggttgcaattgcctcagctggcaatttttatcaagactttgatataacatggggggatggacgtgctaaaatac 344  Q
    |||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53492262 acattcctggtcatttttatttctacggttgcaattgcctctgctggcaatttttatcaagactttgatataacatggggggatggtcgtgctaaaatac 53492361  T
Q  345 tcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagct 444  Q
    |||||| |||||||||||||||| | |||||||| || |||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||    
T  53492362 tcaacagtggccaacttcttactctatctcttgataagtcctctggttcaggctttcaatccaaaaatgaatacctttttggcaaaattgatatgcaact 53492461  T
Q  445 taaacttgttcctggcaactctgctggcaccgtcactgcctattatgtaag 495  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53492462 taaacttgttcctggcaactctgctggcactgtcactgcctattatgtaag 53492512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 563 - 700
Target Start/End: Original strand, 53498908 - 53499045
Alignment:
Q  563 aattcagctatcatcaaaaggtggtgcatgggatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgttt 662  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||    
T  53498908 aattcagctgtcatcaaaaggaggtgcatgggatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgttt 53499007  T
Q  663 agccaaggaaaaggtaacagagagcaacaattctacct 700  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  53499008 agccaaggcaaaggtaacagagagcaacaattttacct 53499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 317 - 495
Target Start/End: Original strand, 53498648 - 53498826
Alignment:
Q  317 acatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttcaatccaaaaatgaat 416  Q
    |||||||| ||||| ||||| |||||||||||||| | | | ||||||||| | |||||||||||| ||||||| || || |||||||||||||||||||    
T  53498648 acatggggagatggtcgtgccaaaatactcaacaacgccaatcttcttactctatctcttgacaaagcctctggttcaggctttcaatccaaaaatgaat 53498747  T
Q  417 acctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcctattatgtaag 495  Q
    || | ||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||||||||||||||||||||    
T  53498748 acttatttggcaaaattgatatgcagattaagcttgttccaggaaactctgctggcactgtcactgcctattatgtaag 53498826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 563 - 692
Target Start/End: Original strand, 53492603 - 53492732
Alignment:
Q  563 aattcagctatcatcaaaaggtggtgcatgggatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgttt 662  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||    
T  53492603 aattcagctgtcatcaaaaggaggtgcatgggatgaaattgactttgaattcttgggaaatttgagtggtgatccttacatccttcataccaatgtgttt 53492702  T
Q  663 agccaaggaaaaggtaacagagagcaacaa 692  Q
    |||||||| |||||| ||||||||||||||    
T  53492703 agccaaggcaaaggtgacagagagcaacaa 53492732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 285 - 495
Target Start/End: Original strand, 53494630 - 53494840
Alignment:
Q  285 cagctggcaatttttatcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatc 384  Q
    ||||||| || ||||| ||  ||||||||||||||||||| ||||| ||||| || |||||| |||| || |||||||| ||||| || ||||||||| |    
T  53494630 cagctggaaacttttaccagaactttgatataacatggggagatggtcgtgccaagatactcgacaacggacaacttctcactttatcccttgacaaagc 53494729  T
Q  385 ctctggctctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcc 484  Q
    |||||| ||||| ||||||||||| |||||||| || |||||||| |||||||||||||| || ||||| ||||| |||||||| || || ||||||||     
T  53494730 ctctggttctggatttcaatccaagaatgaatatctctttggcaacattgatatgcagctcaagcttgtacctggaaactctgcaggaacggtcactgct 53494829  T
Q  485 tattatgtaag 495  Q
    || ||||||||    
T  53494830 tactatgtaag 53494840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 293 - 495
Target Start/End: Original strand, 52590372 - 52590574
Alignment:
Q  293 aatttttatcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggct 392  Q
    |||||| ||||| ||||||||||||||||||| ||||| ||||  ||||| |||||||| || |||||||||||||||||| | |||||| | |||||||    
T  52590372 aattttaatcaatactttgatataacatggggtgatggtcgtggcaaaatcctcaacaacggacaacttcttactttgtctttggacaaagcatctggct 52590471  T
Q  393 ctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcctattatgt 492  Q
    |||| ||||  ||||||||||| ||| | ||||| |||||||| ||||| || || ||||| || || |||||||||||||| |||||  | ||||||||    
T  52590472 ctggatttcgttccaaaaatgagtacttgtttggaaaaattgacatgcaactaaagcttgtgcccggtaactctgctggcacagtcacaacatattatgt 52590571  T
Q  493 aag 495  Q
    |||    
T  52590572 aag 52590574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 347 - 492
Target Start/End: Complemental strand, 53489697 - 53489552
Alignment:
Q  347 aacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagctta 446  Q
    |||||||| || ||||||||| ||||||| || | | ||||||||||||| ||||||||||| ||| |||| |||| ||| || ||||| |||||  |||    
T  53489697 aacaatggtcagcttcttactctgtctctagatagaacctctggctctggctttcaatccaataatcaatatctttatggaaagattgacatgcaaatta 53489598  T
Q  447 aacttgttcctggcaactctgctggcaccgtcactgcctattatgt 492  Q
    ||||||||||||| || || |||||||| |||||||| ||||||||    
T  53489597 aacttgttcctggaaattcagctggcacagtcactgcttattatgt 53489552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 591 - 695
Target Start/End: Original strand, 53494978 - 53495082
Alignment:
Q  591 tgggatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaac 690  Q
    |||||||| ||||||||||||||||| || ||  ||||||| || ||||||| ||||||||||||||||||| | ||||||||||| || ||||| ||||    
T  53494978 tgggatgagattgactttgaattcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaac 53495077  T
Q  691 aattc 695  Q
    |||||    
T  53495078 aattc 53495082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 591 - 697
Target Start/End: Complemental strand, 53489437 - 53489331
Alignment:
Q  591 tgggatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaac 690  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| || |||||  |||| || |||||||  | |||||| |||||  ||||||||||||    
T  53489437 tgggatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcatacaaatgtgtacacccaaggcaaaggggacagagagcaac 53489338  T
Q  691 aattcta 697  Q
    |||||||    
T  53489337 aattcta 53489331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 495
Target Start/End: Original strand, 53501759 - 53501949
Alignment:
Q  306 actttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttcaatc 405  Q
    ||||||||||||||||||| ||||| || || || ||||| ||||||||  |  | || ||| | || ||||||||| | ||||| || || || |||||    
T  53501759 actttgatataacatggggagatggccgagcgaagatactaaacaatggtgagttactcactctatcacttgacaaagcatctggttcaggattccaatc 53501858  T
Q  406 caaaaatgaatacct-ttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcctattatgtaag 495  Q
     || ||||| || || |||||| || ||||||||||| || |||||||| ||||| |||||||||||||| |||||||| ||||| |||||    
T  53501859 aaagaatgagtatctcttttgggaagattgatatgcaactcaaacttgtccctggaaactctgctggcactgtcactgcatattacgtaag 53501949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 703
Target Start/End: Original strand, 53502110 - 53502186
Alignment:
Q  627 agtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaattctacctatg 703  Q
    |||||||| |||||||| |||||||| ||||| || || ||||| ||||| ||||| || ||||||||||| |||||    
T  53502110 agtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaacaattctatctatg 53502186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 302 - 483
Target Start/End: Original strand, 35016252 - 35016433
Alignment:
Q  302 caagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttc 401  Q
    |||||||||||| |||||||||| |||   |||||||| ||| ||||   ||| ||||||||  |  | || |||||||||  |||||||||||| ||      
T  35016252 caagactttgatctaacatggggtgataaccgtgctaagatattcaatggtggtcaacttctatcactttcccttgacaaagtctctggctctggcttca 35016351  T
Q  402 aatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgc 483  Q
    |||| || |  || ||||| ||||| | |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  35016352 aatcaaagagagagtacctatttgggagaattgatatgcagcttaagcttgttgctggcaactctgctggcactgtcactgc 35016433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 703
Target Start/End: Original strand, 35017724 - 35017833
Alignment:
Q  594 gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat 693  Q
    ||||| ||||| ||||| ||||||||||||   ||||||||||| || ||||||||||| ||  | || |  ||||| |||||||| ||||| |||||||    
T  35017724 gatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaacaat 35017823  T
Q  694 tctacctatg 703  Q
    ||||||||||    
T  35017824 tctacctatg 35017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 493
Target Start/End: Original strand, 42990650 - 42990850
Alignment:
Q  293 aatttttatcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggct 392  Q
    ||||| || ||||| |||||| |||||||||| |||   |||||||| | | |||||  ||| || |||||| |  | ||||| ||||||  ||| ||||    
T  42990650 aatttctaccaagattttgatctaacatggggcgatcaccgtgctaagacattcaacggtggtcagcttctttcactttctctcgacaaagtctccggct 42990749  T
Q  393 ctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcctattatgt 492  Q
    |||| || || ||||| || || ||| | || || | |||||||||||| || ||||| ||| |||| ||||||||||| ||||||||||| || |||||    
T  42990750 ctggcttccagtccaagaaagagtacttattcggtagaattgatatgcaactcaaactggttgctggaaactctgctggaaccgtcactgcttactatgt 42990849  T
Q  493 a 493  Q
    |    
T  42990850 a 42990850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 700
Target Start/End: Original strand, 42991060 - 42991163
Alignment:
Q  597 gaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaattct 696  Q
    |||||||| ||||| |||||||||||  | || ||| | || |||||||| ||||| || ||||||   ||||| ||||| |||||||| ||||||||||    
T  42991060 gaaattgattttgagttcttgggaaatgttagcggtaatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattct 42991159  T
Q  697 acct 700  Q
    ||||    
T  42991160 acct 42991163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 380 - 497
Target Start/End: Original strand, 16941461 - 16941578
Alignment:
Q  380 aaatcctctggctctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtca 479  Q
    ||||| ||||||||||| ||||  |||||| |||| ||| | ||||| |||||||| ||||| || ||||||||  |||| |||||||||||||  ||||    
T  16941461 aaatcttctggctctggctttcgttccaaatatgagtacttgtttgggaaaattgacatgcaactcaaacttgtagctggtaactctgctggcattgtca 16941560  T
Q  480 ctgcctattatgtaagca 497  Q
    | ||||||||||||||||    
T  16941561 cagcctattatgtaagca 16941578  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 380 - 497
Target Start/End: Original strand, 17012126 - 17012243
Alignment:
Q  380 aaatcctctggctctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtca 479  Q
    ||||| ||||||||||| ||||  |||||| |||| ||| | ||||| |||||||| ||||| || ||||||||  |||| |||||||||||||  ||||    
T  17012126 aaatcttctggctctggctttcgttccaaatatgagtacttgtttgggaaaattgacatgcaactcaaacttgtagctggtaactctgctggcattgtca 17012225  T
Q  480 ctgcctattatgtaagca 497  Q
    | ||||||||||||||||    
T  17012226 cagcctattatgtaagca 17012243  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 697
Target Start/End: Original strand, 16942130 - 16942233
Alignment:
Q  594 gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat 693  Q
    |||||||| |||||||||||  | || |||||||||||||| || || |||||||| || || || || |  ||||| ||||| || |||||||||||||    
T  16942130 gatgaaatagactttgaatttcttggtaacttgagtggtgatccttatattcttcatacaaacgtattcacacaagggaaagggaatagagagcaacaat 16942229  T
Q  694 tcta 697  Q
    ||||    
T  16942230 tcta 16942233  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 697
Target Start/End: Original strand, 17012795 - 17012898
Alignment:
Q  594 gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat 693  Q
    |||||||| |||||||||||  | || |||||||||||||| || || |||||||| || || || || |  ||||| ||||| || |||||||||||||    
T  17012795 gatgaaatagactttgaatttcttggtaacttgagtggtgatccttatattcttcatacaaacgtattcacacaagggaaagggaatagagagcaacaat 17012894  T
Q  694 tcta 697  Q
    ||||    
T  17012895 tcta 17012898  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 302 - 493
Target Start/End: Complemental strand, 38214883 - 38214692
Alignment:
Q  302 caagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttc 401  Q
    |||||||||||| |||| ||||| ||    |||||||| ||| ||||   ||| ||||||||  || | |||||||| ||| | ||||||||||| || |    
T  38214883 caagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttcc 38214784  T
Q  402 aatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctggcaccgtcactgcctattatgta 493  Q
    ||||||| || || ||  | ||||| | |||||||||||| |||||||||||| |||| || |||||||| || || ||||| || ||||||    
T  38214783 aatccaagaaagagtatttatttggtagaattgatatgcaacttaaacttgttgctggaaattctgctggaactgttactgcttactatgta 38214692  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 700
Target Start/End: Complemental strand, 38214472 - 38214366
Alignment:
Q  594 gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat 693  Q
    ||||||||||| ||||| ||||| |||||  | ||||| || || |||||||| ||||| || ||||||   ||||| ||||| |||||||| |||||||    
T  38214472 gatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat 38214373  T
Q  694 tctacct 700  Q
    |||||||    
T  38214372 tctacct 38214366  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 700
Target Start/End: Complemental strand, 38218691 - 38218585
Alignment:
Q  594 gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat 693  Q
    ||||||||||| ||||| ||||| |||||  | ||||| || || |||||||| ||||| || ||||||   ||||| ||||| |||||||| |||||||    
T  38218691 gatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat 38218592  T
Q  694 tctacct 700  Q
    |||||||    
T  38218591 tctacct 38218585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 302 - 471
Target Start/End: Complemental strand, 38219104 - 38218935
Alignment:
Q  302 caagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttc 401  Q
    |||||||||||| |||| ||||| ||    |||||||| ||| ||||   ||| ||||||||  || | |||||||| ||| | ||||||||||| || |    
T  38219104 caagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttcc 38219005  T
Q  402 aatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgctgg 471  Q
    ||||||| || || ||  | ||||| | |||||||||||| |||||||||||| |||| || ||||||||    
T  38219004 aatccaagaaagagtatttatttggtagaattgatatgcaacttaaacttgttgctggaaattctgctgg 38218935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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