View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10418_high_2 (Length: 678)
Name: NF10418_high_2
Description: NF10418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10418_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 290 - 668
Target Start/End: Original strand, 40723818 - 40724196
Alignment:
| Q |
290 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
389 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723818 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
40723917 |
T |
|
| Q |
390 |
tatcaaatctaccaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccat |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723918 |
tatcaaatctaccaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccat |
40724017 |
T |
|
| Q |
490 |
aagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggat |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724018 |
aagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggat |
40724117 |
T |
|
| Q |
590 |
ggtgcattcttttctgcttcttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctg |
668 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40724118 |
ggtgcattcttttctgcttcttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctg |
40724196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 40666527 - 40666351
Alignment:
| Q |
19 |
atcttctccctaatgcattggagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaa |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666527 |
atcttctccctaatgcattgtagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaa |
40666428 |
T |
|
| Q |
119 |
cctacagagtaaaatcgtaaatgagcaactgaaaatttgaggaaattgaaaacccttattaatactgcaactatcat |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
40666427 |
cctacagagtaaaatcgtaaatgagcaactgaaaatttgaggaaattgaaaaaccttattaatactgcagctatcat |
40666351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 473 - 668
Target Start/End: Complemental strand, 40666066 - 40665870
Alignment:
| Q |
473 |
gattttagcccatccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcat |
572 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40666066 |
gattctagcccatccataagagtcagaagttgtgagacaatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcat |
40665967 |
T |
|
| Q |
573 |
caa-taaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctg |
668 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40665966 |
caaataaagatgatggatggtgcattcttttctgcttcttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctg |
40665870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 290 - 417
Target Start/End: Complemental strand, 40666229 - 40666102
Alignment:
| Q |
290 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
389 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666229 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
40666130 |
T |
|
| Q |
390 |
tatcaaatctaccaaaccttctcaatgc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
40666129 |
tatcaaatctaccaaaccttctcaatgc |
40666102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 40723479 - 40723629
Alignment:
| Q |
19 |
atcttctccctaatgcattggagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaa |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40723479 |
atcttctccctaatgcattgtagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtatcttttgaaattctctccaaatcaa |
40723578 |
T |
|
| Q |
119 |
cctacagagtaaaatcgtaaatgagcaactgaaaatttgaggaaattgaaaa |
170 |
Q |
| |
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||||||||| ||| ||||||||| || | ||||||||||||||||| ||||| |
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| T |
40723579 |
cctacagag-aaagtcgtaaatgtgcgaatgaaaatttgaggaaatcgaaaa |
40723629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 300 - 666
Target Start/End: Original strand, 41092655 - 41093021
Alignment:
| Q |
300 |
ttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatct |
399 |
Q |
| |
|
||||||| || | ||| ||||| || || ||||| || ||||| || ||||| ||||||| || ||||||||||||||||| || ||||||||||| || |
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| T |
41092655 |
ttacatcttcggcgagtttcatattctttgtatgaattcgaagaacctcaagacgcccaacctcgtctggaacaccaatatcaatctccctatcaaacct |
41092754 |
T |
|
| Q |
400 |
accaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcaga |
499 |
Q |
| |
|
|||||||| || | ||| ||||||||||||||||| | ||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||| |
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|
| T |
41092755 |
tccaaacctcctaagtgcagggtcaatgctattgggcctatttgtggctcccataacaattacatgtgcacgtgatttaagaccatccataagggtcaag |
41092854 |
T |
|
| Q |
500 |
agttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattct |
599 |
Q |
| |
|
||||| || |||||||| || ||||||||||| | || || || ||||| || || || ||||| || |||||||||||||||||||| |||||||||| |
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|
| T |
41092855 |
agttgggagacaatcctcctctctacttcaccgtgagttttctctcgcttaggagctatggaatctatctcatcaataaagatgatggaaggtgcattct |
41092954 |
T |
|
| Q |
600 |
tttctgcttcttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctc |
666 |
Q |
| |
|
| || ||||| |||||||| ||||| ||||||||||||||||| ||||| | ||| ||||| ||||| |
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|
| T |
41092955 |
tctcagcttcctcaaatgccttccttagattgctttcactctcaccagcaagtttcgacattatctc |
41093021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 314 - 650
Target Start/End: Complemental strand, 27977635 - 27977299
Alignment:
| Q |
314 |
agcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttctca |
413 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || || ||||| || |||| ||||||||| ||||||||||| || |||| |||||| || |||||||| | | |
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|
| T |
27977635 |
agcttcatattttttgtatggatgcggagaacctcaagacgtccaacttcatctggtacaccaatatcaatctcccgatcaaaccttccaaacctccgaa |
27977536 |
T |
|
| Q |
414 |
atgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaat |
513 |
Q |
| |
|
|| ||||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||| || || |||||||| |
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|
| T |
27977535 |
gagcagggtcgatgctattgggacgatttgttgctcccataacaattacatgtgcacgggatttaagcccatccatgagggtcaagagctgggaaacaat |
27977436 |
T |
|
| Q |
514 |
ccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttca |
613 |
Q |
| |
|
|||| || ||||||||||| ||||| |||| ||| || ||||| || || || |||||||| |||||||| || ||||||||||| || |||||||| |
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|
| T |
27977435 |
tcttcgctcaacttcaccattagtcttctccctctttggagcaatggagtctatctcatcaatgaagatgattgagggtgcattcttctcagcttcttcg |
27977336 |
T |
|
| Q |
614 |
aatgctttcctaagattgctttcactctctccagcca |
650 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||| |
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|
| T |
27977335 |
aatgccttcctcagattactttcactctcaccagcca |
27977299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 593
Target Start/End: Complemental strand, 15690360 - 15690253
Alignment:
| Q |
484 |
atccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatg |
583 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||| || |||||| || |||||| || | |||||| || ||||||||| |||||||||||||| | |
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|
| T |
15690360 |
atccataagattcaagacttgtgaaacaatccttctatcaacttcatcacgtgtcttctctc--ttgggtacagtagaatcaaattcatcaataaagaag |
15690263 |
T |
|
| Q |
584 |
atggatggtg |
593 |
Q |
| |
|
||| |||||| |
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|
| T |
15690262 |
atgaatggtg |
15690253 |
T |
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