View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10418_high_5 (Length: 325)
Name: NF10418_high_5
Description: NF10418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10418_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 25462988 - 25462690
Alignment:
| Q |
18 |
cttcccttgctcatcaacataaccgataaaaagaatattagtaatacgaatattttgtatcagatgtatcaataacaggccttgccaatcctataggggt |
117 |
Q |
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| T |
25462988 |
cttcccttgctcatcaacataaccgataaaaggaatattagtaatatgaatattttgtatcagatgtatcaataacaggccttgccaatcctataggggt |
25462889 |
T |
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| Q |
118 |
agttttgaat----gatataaaatgaaccaaacaaacctgctggtataatcatagaattcttccaactcgacttcctcctcatcgtcataatcaccataa |
213 |
Q |
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| T |
25462888 |
agttttgaatgatcgatataaaatgaaccaaacaaacctgctggtataatcatagaattcttccaactctacttcctcctcatcgtcatcatcaccataa |
25462789 |
T |
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| Q |
214 |
tgcaccttgcagtgatttttcgctaccatgtgtttcctgactgcttccaagctgctgaaaggatgacaccgatcgttgcactacagacacaagtagtctc |
313 |
Q |
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| T |
25462788 |
t--accttgcagtgatttttcgctaccatgtgtttcctgactgcttccaagctgctgaaaggatgacactgatcgttgcagtacagacacaagtagtctc |
25462691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 1511603 - 1511297
Alignment:
| Q |
18 |
cttcccttgctcatcaacataaccgataaaaagaatattagtaatacgaatattttgtatcagatgtatcaataacaggccttgccaatcctataggggt |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| |
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| T |
1511603 |
cttcccttgctcatcaacataactgataaaaagaatattagtaatacgaatattttatatctgatgtatcaata---ggccttgcaaatcctataggggt |
1511507 |
T |
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| Q |
118 |
agtttt-------------gaatgatataaaatgaaccaaacaaacctgctggtataatcatagaattcttccaactcgacttcctcctcatcgtcataa |
204 |
Q |
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| T |
1511506 |
agttttaaaaggaaaatttgaatgatataaaatgaaccaaacaaacctgctggtataatcatagaattcttccaactctacttcctcctcatcgtcatca |
1511407 |
T |
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| Q |
205 |
tcaccataatgcaccttgcagtgatttttcgctaccatgtgtttcctgactgcttccaagctgctgaaaggatgacaccgatcgttgcactacagacaca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
1511406 |
tcaccataatgcaccttgcagtgatttttcgctaccatgtgtttcctgactgcttccaagctgctgaaaggatgacactgatcgttgcagtacagacaca |
1511307 |
T |
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| Q |
305 |
agtagtctct |
314 |
Q |
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|||||||||| |
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| T |
1511306 |
agtagtctct |
1511297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 136 - 314
Target Start/End: Complemental strand, 17728228 - 17728050
Alignment:
| Q |
136 |
atgaaccaaacaaacctgctggtataatcatagaattcttccaactcgacttcctcctcatcgtcataatcaccataatgcaccttgcagtgatttttcg |
235 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||| | |
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| T |
17728228 |
atgaacaaaactaacctgctggtataatcatagaattcttccaactctacttcctcctcatcgtcatcatctccataatgcactttgcagtgattttttg |
17728129 |
T |
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| Q |
236 |
ctaccatgtgtttcctgactgcttccaagctgctgaaaggatgacaccgatcgttgcactacagacacaagtagtctct |
314 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
17728128 |
ctgccatgtgtttcctgattgcttccaagctgctgaaaggatgacaccgatcgtcgcagtacagacacaagtagtctct |
17728050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 17728358 - 17728319
Alignment:
| Q |
18 |
cttcccttgctcatcaacataaccgataaaaagaatatta |
57 |
Q |
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||||||||||||||||||||||| ||||||||||| |||| |
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| T |
17728358 |
cttcccttgctcatcaacataactgataaaaagaaaatta |
17728319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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