View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10418_high_7 (Length: 239)

Name: NF10418_high_7
Description: NF10418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10418_high_7
NF10418_high_7
[»] chr4 (11 HSPs)
chr4 (20-222)||(11192468-11192670)
chr4 (20-221)||(11189891-11190092)
chr4 (20-220)||(11179230-11179430)
chr4 (31-221)||(11166215-11166405)
chr4 (20-222)||(11197672-11197873)
chr4 (29-137)||(11160582-11160690)
chr4 (63-137)||(5646597-5646671)
chr4 (63-137)||(11174637-11174711)
chr4 (63-137)||(11182099-11182173)
chr4 (155-221)||(11174747-11174813)
chr4 (65-137)||(11932023-11932095)
[»] chr5 (3 HSPs)
chr5 (65-137)||(8991411-8991483)
chr5 (65-137)||(8981906-8981978)
chr5 (70-126)||(36686949-36687005)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 11192670 - 11192468
Alignment:
Q  20 caatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattg 119  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192670 caatcccagacgatcaagcttttgatagacgatgactgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattg 11192571  T
Q  120 aatattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcat 219  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11192570 agtattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggacgctgagtttgtccaggttgatcaagatactctcttcaatctcat 11192471  T
Q  220 ctc 222  Q
    |||    
T  11192470 ctc 11192468  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 11190092 - 11189891
Alignment:
Q  20 caatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattg 119  Q
    ||||| ||||||||||||| |||||| | |||| |||||||||| ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  11190092 caatcgcagacgatcaagcatttgatcggcgaccagtgtgccaatgacactgaaatccctatttcgaacgtaacaggcaagatcttggccatggttattg 11189993  T
Q  120 aatattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcat 219  Q
    | |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| || |||||    
T  11189992 agtattgcaagaaacatgttgatgctgtaagttctgatgagcttaggaagtgggacgctgaatttgtccaggtcgatcaagatactctcttgaaactcat 11189893  T
Q  220 ct 221  Q
    ||    
T  11189892 ct 11189891  T

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Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 11179430 - 11179230
Alignment:
Q  20 caatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattg 119  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |  |||| |||||  ||||||||||||| ||||||||||    
T  11179430 caatcccagacgatcaagcatttgatcgacgaggagtgtgccaacgacactggaatccctttaacgaatgtaactggcaagatcttggctatggttattg 11179331  T
Q  120 aatattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcat 219  Q
    | |||||||||||||||| ||||| || ||||||||||||||||  |||||||||| |||| |||||| ||||||||||| |||||||||||||||||||    
T  11179330 agtattgcaagaaacatgttgatgctgcaagttctgatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcaatctcat 11179231  T
Q  220 c 220  Q
    |    
T  11179230 c 11179230  T

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Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 11166405 - 11166215
Alignment:
Q  31 gatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaag 130  Q
    |||| ||| ||||||  |||||| |||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  11166405 gatcgagcatttgatccacgacgggtgtaccaaccacattggaatccctatttcgaacgtaaccggcaagatcttggctatggttattgagtattgcaag 11166306  T
Q  131 aaacatgctgatgatgtaagttctgatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcatct 221  Q
    ||||||| ||||| || |||||||||||| |||  |||||||||| |||| |||| | || ||||||||||||||||||| || |||||||    
T  11166305 aaacatgttgatgctgcaagttctgatgaacttgagaagtgggacgctgaatttgacaagattgatcaagatactctcttgaaactcatct 11166215  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 11197873 - 11197672
Alignment:
Q  20 caatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattg 119  Q
    |||||| |||||||||||| ||||||  || | || ||||||||| | | ||||||| |||||||||||  |||   |||||||||||| ||| ||||||    
T  11197873 caatcctagacgatcaagcatttgatcaacaatgaatgtgccaacaaaaatggaatcactatttcgaacacaactgacaagatcttggctatgtttattg 11197774  T
Q  120 aatattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcat 219  Q
    | |||||||||||||||| | ||| |  ||||| ||||| ||||||||| |||||| |||| || ||||| ||||||||||||||| | |||| ||||||    
T  11197773 agtattgcaagaaacatgttaatgctaaaagttatgatgggcttaggaattgggacgctgaattcgtcca-gttgatcaagatactatgttcagtctcat 11197675  T
Q  220 ctc 222  Q
    |||    
T  11197674 ctc 11197672  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 11160582 - 11160690
Alignment:
Q  29 acgatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgca 128  Q
    |||||||||| |||||| || ||| | |||||| |||||| |||||||||| || | ||||| ||| ||||||||||||| |||||||||||  ||||||    
T  11160582 acgatcaagcatttgatcgatgacaattgtgccgacgacagtggaatccctcttccaaacgttaccggcaagatcttggctatggttattgagcattgca 11160681  T
Q  129 agaaacatg 137  Q
    |||| ||||    
T  11160682 agaagcatg 11160690  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 5646597 - 5646671
Alignment:
Q  63 acgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 137  Q
    ||||||||||||||||||| || |||||||||||| ||||  |||| ||||| ||||| ||||||||||||||||    
T  5646597 acgacactggaatccctatctcaaacgtaaccagcgagattctggctatggtaattgagtattgcaagaaacatg 5646671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 11174637 - 11174711
Alignment:
Q  63 acgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 137  Q
    |||||||||||||||||||| |||| |||||  ||||||||||||| | |||||| || ||||||||||||||||    
T  11174637 acgacactggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatg 11174711  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 11182099 - 11182173
Alignment:
Q  63 acgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 137  Q
    |||||||||||||||||||| |||| |||||  ||||||||||||| | |||||| || ||||||||||||||||    
T  11182099 acgacactggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatg 11182173  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 11174747 - 11174813
Alignment:
Q  155 gatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcatct 221  Q
    ||||| |||| |||||||||  |||| || ||||||||||||||||| || |||||| |||||||||    
T  11174747 gatgaacttaagaagtgggatgctgaattcgtccaggttgatcaagaaaccctcttcgatctcatct 11174813  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 11932095 - 11932023
Alignment:
Q  65 gacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 137  Q
    |||||| |||||||||||||  | |||||| | | ||||||||| | ||||||||| ||||||||||| ||||    
T  11932095 gacactagaatccctatttctgaggtaaccgggaggatcttggcgaaggttattgagtattgcaagaagcatg 11932023  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 8991411 - 8991483
Alignment:
Q  65 gacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 137  Q
    |||| |||||||||| || | ||||| ||||||||||||||||| | ||| ||||| ||||||||||| ||||    
T  8991411 gacagtggaatccctcttcccaacgttaccagcaagatcttggcgaaggtgattgagtattgcaagaagcatg 8991483  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 8981906 - 8981978
Alignment:
Q  65 gacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 137  Q
    |||| |||||||||| || | ||||| ||||| ||||||||||| | ||| ||||| ||||||||||| ||||    
T  8981906 gacagtggaatccctcttcccaacgttaccagtaagatcttggcgaaggtgattgagtattgcaagaagcatg 8981978  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 36687005 - 36686949
Alignment:
Q  70 tggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattg 126  Q
    |||||||||| |||| || ||||| ||||| |||||||| | |||||||||||||||    
T  36687005 tggaatccctctttcaaatgtaactagcaacatcttggcaaaggttattgaatattg 36686949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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