View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10418_low_10 (Length: 241)
Name: NF10418_low_10
Description: NF10418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10418_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 42529714 - 42529936
Alignment:
| Q |
19 |
catattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttatctacattggaataaggaggtagacttcatagtgcaatgca |
118 |
Q |
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| T |
42529714 |
catattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttatctacattggaataaggaggtagacttcatagtgcaatgca |
42529813 |
T |
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| Q |
119 |
atgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaa |
218 |
Q |
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| T |
42529814 |
atgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaa |
42529913 |
T |
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| Q |
219 |
accaactatatttatccttcttt |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
42529914 |
accaactatatttatccttcttt |
42529936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 42535436 - 42535653
Alignment:
| Q |
19 |
catattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttatctacattggaataaggaggtagacttcatagtgcaatgca |
118 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||| |||||| || |||||||| ||||| |||||||||| | || ||| |||| |
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| T |
42535436 |
catattccagtcaagattatatccattgaggatggcaaagttctcaaacaattcaattgtctacattagaatagggaggtagacatgattgtg---tgca |
42535532 |
T |
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| Q |
119 |
atgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaa |
218 |
Q |
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| T |
42535533 |
atgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttgacttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaa |
42535632 |
T |
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| Q |
219 |
accaactatatttatccttct |
239 |
Q |
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| T |
42535633 |
cccatcaagatttatctttct |
42535653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 27824635 - 27824786
Alignment:
| Q |
19 |
catattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttatctac---attggaataaggaggtagacttcatagtgcaat |
115 |
Q |
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||||||||| | || ||||||||||||||||||||| ||||||||||| ||||| | |||||| || |||||||| |||| |||||||||| ||||| |
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| T |
27824635 |
catattccactgaaaattatatccattgaggatggcacagttctcaaagcattcaatcatctactccatcggaataagaaggtggacttcatagagcaat |
27824734 |
T |
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| Q |
116 |
gcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttga |
167 |
Q |
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||||||||||||| ||||||||||||| |||| |||||||| |||||||| |
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| T |
27824735 |
tcaatgaaaagcttctagtcaagcaggaaaatgagaaccttcaaattcttga |
27824786 |
T |
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