View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10418_low_12 (Length: 203)
Name: NF10418_low_12
Description: NF10418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10418_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 14242069 - 14241890
Alignment:
| Q |
3 |
gttatatattcatgagaggaaatggaagaggaaaaactgcaattgtgtggtccgaaagctcctctaacaacatagcttctgccaccttcaaagttgaagc |
102 |
Q |
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| T |
14242069 |
gttatacattcatgagaggaaatggaagaggaaaaactgcaattgtttggtccgaaagctcctctaacaacatagcttctgccaccttcaaagttgaagc |
14241970 |
T |
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| Q |
103 |
ctcggatttcattgcctttggaattagcttcaaggtattttcatacttctatcaatattgtataccagaaaatgttgaac |
182 |
Q |
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| T |
14241969 |
cttggatttcattgcctttggaattagcttcaaggtattttcatacttctatcaatattgtataccagaaaatgctgaac |
14241890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 12956530 - 12956709
Alignment:
| Q |
3 |
gttatatattcatgagaggaaatggaagaggaaaaactgcaattgtgtggtccgaaagctcctctaacaacatagcttctgccaccttcaaagttgaagc |
102 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12956530 |
gttatatatttatgagaggaaatggaagaggaaaaactgccattgtttggtctgaaagctcctctgacaacatagcttctgccaccttcaaagttgaagc |
12956629 |
T |
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| Q |
103 |
ctcggatttcattgcctttggaattagcttcaaggtattttcatac-ttctatcaatattgtataccagaaaatgttgaa |
181 |
Q |
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| T |
12956630 |
ccccgatttcattgcctttggaattagcttcaaggtaatatcatactttctactaatattgtataccataaaatgttgaa |
12956709 |
T |
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