View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10418_low_6 (Length: 325)
Name: NF10418_low_6
Description: NF10418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10418_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 15551741 - 15551443
Alignment:
| Q |
16 |
tttaatacaaaactttcaaccaacacataacaactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttccct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
15551741 |
tttaatacaaaactttcaaccaacacataacaactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttccat |
15551642 |
T |
|
| Q |
116 |
tcccaggtttccatccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttatcatcaacactcttaaaccacaa |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
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| T |
15551641 |
tcccagcattccatccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccataa |
15551542 |
T |
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| Q |
216 |
aactccatcaaccaatctattttcatcccaaactgcatcctttccttcaactatagcaacttctgtttgaatagcaacatctactaacacatcattctt |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15551541 |
cactccatcaaccaatctattttcatcccaaatagcatcctttctttcaaccttagcaacttctgtttgaatagcaacatctactaacacatcattctt |
15551443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 26 - 299
Target Start/End: Complemental strand, 15519681 - 15519408
Alignment:
| Q |
26 |
aactttcaaccaacacataacaactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttcccttcccaggttt |
125 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
15519681 |
aactttcaaccaacacataactactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttccattcccagcatt |
15519582 |
T |
|
| Q |
126 |
ccatccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttatcatcaacactcttaaaccacaaaactccatca |
225 |
Q |
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||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
15519581 |
ccatccaaaccttctttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttcttttcaacactcttaaaccacaaaactccatca |
15519482 |
T |
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| Q |
226 |
accaatctattttcatcccaaactgcatcctttccttcaactatagcaacttctgtttgaatagcaacatctac |
299 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15519481 |
accaatctattttcatcccaaacagcatcctttccttcaaccttagcaacttctgtttgaatagcaacatctac |
15519408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 26 - 299
Target Start/End: Complemental strand, 15529420 - 15529147
Alignment:
| Q |
26 |
aactttcaaccaacacataacaactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttcccttcccaggttt |
125 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||| ||||| | || |
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| T |
15529420 |
aactttcaaccagcacataacaactaaatttcttccatttgtttgttccaccaaactcttcaaattttgttaccttgacttgtcttcctttccctgcatt |
15529321 |
T |
|
| Q |
126 |
ccatccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttatcatcaacactcttaaaccacaaaactccatca |
225 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
15529320 |
ccatccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaaaactccatca |
15529221 |
T |
|
| Q |
226 |
accaatctattttcatcccaaactgcatcctttccttcaactatagcaacttctgtttgaatagcaacatctac |
299 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
15529220 |
accaatctattttcatcccaaatagcatcctttctttcaaccttagcaacttctgtttgaatagcaacatctac |
15529147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 29 - 309
Target Start/End: Complemental strand, 15523336 - 15523056
Alignment:
| Q |
29 |
tttcaaccaacacataacaactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttcccttcccaggtttcca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
15523336 |
tttcaaccaacacataacaactaaatttattccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttccattcccagcattcca |
15523237 |
T |
|
| Q |
129 |
tccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttatcatcaacactcttaaaccacaaaactccatcaacc |
228 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
15523236 |
tccaaaccttctttgttcccatttcattgcctcaccaacttccaacctcaatccaacacttttcttttcaacactcttaaaccacaaaactccatgaacc |
15523137 |
T |
|
| Q |
229 |
aatctattttcatcccaaactgcatcctttccttcaactatagcaacttctgtttgaatagcaacatctactaacacatca |
309 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||| | ||||||| |
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| T |
15523136 |
aatctattttcatcccaaacagcatcctttccttcaattttagcaacttctgtttgaataacaacatctacaaccacatca |
15523056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 26 - 309
Target Start/End: Complemental strand, 15546928 - 15546645
Alignment:
| Q |
26 |
aactttcaaccaacacataacaactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttcccttcccaggttt |
125 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| || |
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| T |
15546928 |
aactttcaaccaacacataactactaaatttcttccacttatttgctccatcaaactcctcaacttttgttactctcacttgtctttcattcccagcatt |
15546829 |
T |
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| Q |
126 |
ccatccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttatcatcaacactcttaaaccacaaaactccatca |
225 |
Q |
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||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
15546828 |
ccatccaaaccttctttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaaaactccatca |
15546729 |
T |
|
| Q |
226 |
accaatctattttcatcccaaactgcatcctttccttcaactatagcaacttctgtttgaatagcaacatctactaacacatca |
309 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||| | ||||||| |
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| T |
15546728 |
accaatctattttcatcccaaacagcatcctttccttcaaccttagcaatttctgtttgaataacaacatctacaagcacatca |
15546645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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