View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10418_low_9 (Length: 255)

Name: NF10418_low_9
Description: NF10418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10418_low_9
NF10418_low_9
[»] chr3 (18 HSPs)
chr3 (27-241)||(22358608-22358822)
chr3 (27-241)||(22636109-22636323)
chr3 (47-233)||(22437257-22437443)
chr3 (50-241)||(22631095-22631286)
chr3 (50-241)||(22632491-22632682)
chr3 (47-248)||(22431774-22431972)
chr3 (50-241)||(22468574-22468765)
chr3 (141-237)||(22368626-22368722)
chr3 (139-241)||(22443454-22443556)
chr3 (185-241)||(22459220-22459276)
chr3 (185-241)||(22482201-22482257)
chr3 (191-237)||(2748680-2748726)
chr3 (191-237)||(2768751-2768797)
chr3 (191-237)||(2839010-2839056)
chr3 (191-237)||(2856220-2856266)
chr3 (146-248)||(22207653-22207755)
chr3 (63-132)||(22459119-22459188)
chr3 (63-132)||(22482100-22482169)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 22358608 - 22358822
Alignment:
Q  27 catgatctttttcagtgccagtatcttttatttctttaattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgac 126  Q
    |||||||||||||||| |  ||||| ||||||||  | |||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||    
T  22358608 catgatctttttcagttcttgtatcatttatttcacttattcgggatttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttgac 22358707  T
Q  127 acagtttgtagcaccagcagcacatccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttct 226  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  22358708 acagtttgtaacaccagcagcacatccaggatcaggagcatgttgttcctcaagaaagatataatcatcaatgacatcttctatgtgaaaagatgcttct 22358807  T
Q  227 atcagctgcttgatc 241  Q
    |||||||||||||||    
T  22358808 atcagctgcttgatc 22358822  T

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Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 22636109 - 22636323
Alignment:
Q  27 catgatctttttcagtgccagtatcttttatttctttaattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgac 126  Q
    |||||||||||||||| |  ||||| ||||||||  | |||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||    
T  22636109 catgatctttttcagttcttgtatcatttatttcacttattcgggatttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttgac 22636208  T
Q  127 acagtttgtagcaccagcagcacatccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttct 226  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  22636209 acagtttgtagcaacagcagcacaaccaggatcaggagcatgttgttcctcaagaaagatataatcatcaatgacatcttcaatgtgaaaagatgcttct 22636308  T
Q  227 atcagctgcttgatc 241  Q
    |||||||||||||||    
T  22636309 atcagctgcttgatc 22636323  T

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Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 47 - 233
Target Start/End: Original strand, 22437257 - 22437443
Alignment:
Q  47 gtatcttttatttctttaattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgacacagtttgtagcaccagcag 146  Q
    ||||||||||||||  | |||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |    
T  22437257 gtatcttttatttcactcattcgggatttgatgttctgaatcgtgtaggctatttggagacggtgagccatagttttgacacagtttgtggcaccagcgg 22437356  T
Q  147 cacatccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttctatcagct 233  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||  |||||||||||||| ||||    
T  22437357 cacatccaggatcaggagcttgttgttcctcatggaagatataatcatcaatgacatcttctatgtcaaaagatgcttctattagct 22437443  T

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Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 22631095 - 22631286
Alignment:
Q  50 tcttttatttctttaattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgacacagtttgtagcaccagcagcac 149  Q
    |||||||||||| ||||| |||||||||| | |||||||||||| || ||||||||||| |||  | ||||||| ||  |||     || ||||||||||    
T  22631095 tcttttatttctctaatttgggatttgatgttctgaatcttgtaagcaatttggagacgaagaatcttagttttcaccaagtcaacggctccagcagcac 22631194  T
Q  150 atccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgcttgatc 241  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22631195 atccaggatcaggagcatgttgttcctcatggaagatataatcatcaatgacatcttccatgtggaaagatgcttctatcagctgcttgatc 22631286  T

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Target: chr3; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 22632491 - 22632682
Alignment:
Q  50 tcttttatttctttaattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgacacagtttgtagcaccagcagcac 149  Q
    |||||||||||| |||||| ||||||||| | |||||||||||  || ||||||||||| |||  | ||||||| ||  |||   |||| |||| |||||    
T  22632491 tcttttatttctctaattctggatttgatgttctgaatcttgtcagcaatttggagacgaagaatcttagttttcaccaagtcaatagctccagtagcac 22632590  T
Q  150 atccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgcttgatc 241  Q
    |||||||||||| ||  |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22632591 atccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgcttgatc 22632682  T

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Target: chr3; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 47 - 248
Target Start/End: Original strand, 22431774 - 22431972
Alignment:
Q  47 gtatcttttatttctttaattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgacacagtttgtagcaccagcag 146  Q
    ||||||||||||||  |||||||||||||||| | |||||||||||| |||||||||||||| |||  | |||||||||   |||    |  ||||||||    
T  22431774 gtatcttttatttcactaattcgggatttgatgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtc---aagaccagcag 22431870  T
Q  147 cacatccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgcttgatctctgc 246  Q
    | ||||||||||||| ||  |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||    
T  22431871 cgcatccaggatcagaagattgttgttcttcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgc 22431970  T

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Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 22468574 - 22468765
Alignment:
Q  50 tcttttatttctttaattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgacacagtttgtagcaccagcagcac 149  Q
    |||||||||||| | |||||||| ||||| | |||||||||||| | |||||||||||| ||   | ||||||| ||  |||    ||||||||||||||    
T  22468574 tcttttatttctctgattcgggacttgatgttctgaatcttgtaagttatttggagacgaaggatcttagttttcaccaagtcaacagcaccagcagcac 22468673  T
Q  150 atccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgcttgatc 241  Q
    |||||||||||| ||  |||||||||||||| ||||||||||||||||  |||||||| |||||  ||||||||||||||||||||||||||    
T  22468674 atccaggatcagaagattgttgttcctcaagtaagatataatcatcaaccacatcttctatgtgataagatgcttctatcagctgcttgatc 22468765  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 22368626 - 22368722
Alignment:
Q  141 cagcagcacatccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgctt 237  Q
    |||||||||||||||| |||| ||  || |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  22368626 cagcagcacatccaggttcagaagattgatgttcctcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgtttctatcagctgctt 22368722  T

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Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 22443454 - 22443556
Alignment:
Q  139 accagcagcacatccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgcttg 238  Q
    |||||||||||||||| |||||| ||  || ||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||| ||| |||    
T  22443454 accagcagcacatccaagatcagaagattgatgttcttcaaggaagatataatcatcaatgacatcttctatatgaaaagatgcttctatcaactgtttg 22443553  T
Q  239 atc 241  Q
    |||    
T  22443554 atc 22443556  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 22459220 - 22459276
Alignment:
Q  185 atataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgcttgatc 241  Q
    ||||| |||||||||||||||| ||||   |||||||||||||| ||||||||||||    
T  22459220 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatc 22459276  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 22482201 - 22482257
Alignment:
Q  185 atataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgcttgatc 241  Q
    ||||| |||||||||||||||| ||||   |||||||||||||| ||||||||||||    
T  22482201 atatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatc 22482257  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 2748726 - 2748680
Alignment:
Q  191 tcatcaatgacatcttcaatgtggaaagatgcttctatcagctgctt 237  Q
    ||||||||||||||||||||| | || ||||||||| ||||||||||    
T  2748726 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2748680  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 2768797 - 2768751
Alignment:
Q  191 tcatcaatgacatcttcaatgtggaaagatgcttctatcagctgctt 237  Q
    ||||||||||||||||||||| | || ||||||||| ||||||||||    
T  2768797 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2768751  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 2839010 - 2839056
Alignment:
Q  191 tcatcaatgacatcttcaatgtggaaagatgcttctatcagctgctt 237  Q
    ||||||||||||||||||||| | || ||||||||| ||||||||||    
T  2839010 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2839056  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 2856220 - 2856266
Alignment:
Q  191 tcatcaatgacatcttcaatgtggaaagatgcttctatcagctgctt 237  Q
    ||||||||||||||||||||| | || ||||||||| ||||||||||    
T  2856220 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2856266  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 22207755 - 22207653
Alignment:
Q  146 gcacatccaggatcaggagcatgttgttcctcaaggaagatataatcatcaatgacatcttcaatgtggaaagatgcttctatcagctgcttgatctctg 245  Q
    ||||||||||||||| |||  |||||| |||||   |  ||||| ||||||||||||||||  || || |||||||||||| |||||||  |||||| ||    
T  22207755 gcacatccaggatcatgaggctgttgtccctcacatatcatatattcatcaatgacatcttgtatctgaaaagatgcttctctcagctgtctgatctttg 22207656  T
Q  246 ctt 248  Q
    |||    
T  22207655 ctt 22207653  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 22459119 - 22459188
Alignment:
Q  63 taattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgacacagtt 132  Q
    ||||| |||||||||| | |||||||||||| ||||||||| |||| |||   |||||||||||| ||||    
T  22459119 taatttgggatttgattttctgaatcttgtatgctatttggcgacgaagaattatagttttgacaaagtt 22459188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 22482100 - 22482169
Alignment:
Q  63 taattcgggatttgatatcctgaatcttgtaggctatttggagacggagagccatagttttgacacagtt 132  Q
    ||||| |||||||||| | |||||||||||| ||||||||| |||| |||   |||||||||||| ||||    
T  22482100 taatttgggatttgattttctgaatcttgtatgctatttggcgacgaagaattatagttttgacaaagtt 22482169  T

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