View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_high_1 (Length: 703)
Name: NF10419_high_1
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 23 - 452
Target Start/End: Complemental strand, 51538342 - 51537913
Alignment:
| Q |
23 |
atcccaaactttataggaggtggagttgctgtttcatttctgatctcccctaccaatcatcgatctactgtggtacaggctcctctttttcagatccggc |
122 |
Q |
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| T |
51538342 |
atcccaaactttataggaggtggagttgctgtttcatttcagatctcccctaccaatcatcgatctactgtggtacaagctcctctttttcagatccggc |
51538243 |
T |
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| Q |
123 |
tctgggtccgcaaaagggtggttgactcgtttttggtttccactagttttgttcttgcaagaatggtgcgtgttcacgcacgtcgattgacggtggtggt |
222 |
Q |
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| T |
51538242 |
tttgggtccgcaaaagggtggttgactcgtttttggtttcctctagttttgttcttgcaagaatggtgggtgttcacgcacgtcgattgacagtggtggt |
51538143 |
T |
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| Q |
223 |
ggtccgtggtcgggagatggtttgtttcgggattgagttgttgtgcttggttggagttaagctccctcatgtggtttttgttgctcgtccgttgtgtttg |
322 |
Q |
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| T |
51538142 |
ggtccgtggtcgggagatggtttgtttcgggattgagttgttgtgcttggttggtgttaagctccctcatgtggtttttgttgctcgtcggttgtgtttg |
51538043 |
T |
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| Q |
323 |
tttcgtcagttgccagttgttcgttggagggcctttatgtcttgttcgtcggtagtttctcaccgttcggcatactcatatccgttctttcaggtttgag |
422 |
Q |
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| T |
51538042 |
tttcttcagttgctagttgtttgttggagggcctttatgtcttgttcgtcggtagtttctcaccgtttggcatactcatatccgttctttcaggtttgag |
51537943 |
T |
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| Q |
423 |
tgggtgttctccgttgtcgttccagtgcac |
452 |
Q |
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| T |
51537942 |
tgggtgttctccgttgtcgttccagtgcac |
51537913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 513 - 612
Target Start/End: Complemental strand, 51537851 - 51537752
Alignment:
| Q |
513 |
tcggacgactgttttgatgttcgaaacgagattgggagatttagacttactcattttgtaatggttgcgtgtttgtgactcaaaaattcgaaagggtctg |
612 |
Q |
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| T |
51537851 |
tcggacgactgttctgttgttcgaaatgagatcgggagatttagacttactcattttgtaatggttgcgcgtttgtgactcaaaaattcgaaagggtctg |
51537752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 601 - 693
Target Start/End: Complemental strand, 51537739 - 51537647
Alignment:
| Q |
601 |
cgaaagggtctgatttctaagactcatcactcgatctgagttcttatgcgttgaaaccggctgtgtttggtgacatacttcttcgactctctg |
693 |
Q |
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| T |
51537739 |
cgaatgggtctggtttctaatactcatcattcgatctgagttcttatacgttaaaatcggctgtgtttggtggcatacttcttcgactctctg |
51537647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 653
Target Start/End: Complemental strand, 41839770 - 41839738
Alignment:
| Q |
621 |
gactcatcactcgatctgagttcttatgcgttg |
653 |
Q |
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| T |
41839770 |
gactcatccctcgatctgagttcttatgcgttg |
41839738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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