View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10419_high_15 (Length: 252)

Name: NF10419_high_15
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10419_high_15
NF10419_high_15
[»] chr2 (1 HSPs)
chr2 (2-252)||(41230063-41230313)
[»] chr8 (7 HSPs)
chr8 (2-81)||(37382295-37382374)
chr8 (2-92)||(37374953-37375043)
chr8 (2-92)||(37360131-37360221)
chr8 (2-92)||(37367843-37367933)
chr8 (159-188)||(32976483-32976512)
chr8 (163-248)||(37382442-37382527)
chr8 (161-189)||(30251384-30251412)
[»] chr3 (4 HSPs)
chr3 (4-90)||(39243459-39243545)
chr3 (159-189)||(22667513-22667543)
chr3 (159-189)||(22724152-22724182)
chr3 (161-189)||(5448556-5448584)
[»] chr1 (3 HSPs)
chr1 (159-199)||(28837273-28837313)
chr1 (159-188)||(6292602-6292631)
chr1 (161-189)||(41505786-41505814)
[»] chr7 (3 HSPs)
chr7 (159-193)||(21073247-21073281)
chr7 (160-189)||(11619088-11619117)
chr7 (159-199)||(22759271-22759311)
[»] chr4 (4 HSPs)
chr4 (159-193)||(3639094-3639128)
chr4 (159-193)||(21157878-21157912)
chr4 (158-194)||(28615633-28615669)
chr4 (159-187)||(47970406-47970434)
[»] chr6 (2 HSPs)
chr6 (158-187)||(32848528-32848557)
chr6 (161-189)||(35069542-35069570)
[»] chr5 (2 HSPs)
chr5 (160-189)||(15015954-15015983)
chr5 (161-193)||(15246945-15246977)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 41230313 - 41230063
Alignment:
Q  2 taggtttaaagtttggaattcatgttatgagagggataagcacacaagctgtggatgcaaatacccctattctagatacatcaaaggtatttggtttgca 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41230313 taggtttaaagtttggaattcatattatgagagggataagcacacaagctgtggatgcaaatacccctattctagatacatcaaaggtatttggtttgca 41230214  T
Q  102 tttttgatttaacttgatcttctatttatttttgtattatgaacttatcagtgcttatgcttatgtcagtagataagctcaaataagcaaattaaaaata 201  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41230213 tttttgatttaacttgatcttctatttatttctgtattatgaacttatcagtgcttatgcttatgtcagtagataaggtcaaataagcaaattaaaaata 41230114  T
Q  202 agtcagttcaaacatgcacttaatctaaaacaaaatttcatattgactttt 252  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41230113 agtcagttcatacatgcacttaatctaaaacaaaatttcatattgactttt 41230063  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 37382295 - 37382374
Alignment:
Q  2 taggtttaaagtttggaattcatgttatgagagggataagcacacaagctgtggatgcaaatacccctattctagataca 81  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||    
T  37382295 taggtttgaaatttggaattcatgttatgagagggattagcacacaagctgtgaatgcaaacacccctatcctagataca 37382374  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 37374953 - 37375043
Alignment:
Q  2 taggtttaaagtttggaattcatgttatgagagggataagcacacaagctgtggatgcaaatacccctattctagatacatcaaaggtatt 92  Q
    ||||||||||||||||||||||| |||||  |||||| ||||||||||||||| ||||||| |||||||| ||||||||| ||| ||||||    
T  37374953 taggtttaaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagcaacggtatt 37375043  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 37360131 - 37360221
Alignment:
Q  2 taggtttaaagtttggaattcatgttatgagagggataagcacacaagctgtggatgcaaatacccctattctagatacatcaaaggtatt 92  Q
    ||||||| ||||||||||||||| |||||  |||||| ||||||||||||||| ||||||| |||||||| ||||||||| ||| ||||||    
T  37360131 taggtttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtatt 37360221  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 37367933 - 37367843
Alignment:
Q  2 taggtttaaagtttggaattcatgttatgagagggataagcacacaagctgtggatgcaaatacccctattctagatacatcaaaggtatt 92  Q
    ||||||| ||||||||||||||| |||||  |||||| ||||||||||||||| ||||||| |||||||| ||||||||| ||| ||||||    
T  37367933 taggtttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtatt 37367843  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 32976483 - 32976512
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataag 188  Q
    ||||||||||||||||||||||||||||||    
T  32976483 tgcttatgtcagtagataagctcaaataag 32976512  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 37382442 - 37382527
Alignment:
Q  163 tatgtcagtagataagctcaaataagcaaattaaaaataagtcagttcaaacatgcacttaatctaaaacaaaatttcatattgac 248  Q
    ||||| ||| ||||| ||||||||||| |||| |||||||| || |||||| |  ||| ||| ||||||||||| ||| |||||||    
T  37382442 tatgtaagtggataaactcaaataagcgaattcaaaataagccaattcaaagagacacgtaacctaaaacaaaagttcttattgac 37382527  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 30251412 - 30251384
Alignment:
Q  161 cttatgtcagtagataagctcaaataagc 189  Q
    |||||||||||||||||||||||||||||    
T  30251412 cttatgtcagtagataagctcaaataagc 30251384  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 39243459 - 39243545
Alignment:
Q  4 ggtttaaagtttggaattcatgttatgagagggataagcacacaagctgtggatgcaaatacccctattctagatacatcaaaggta 90  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||| || ||||| ||||||||| ||| ||||    
T  39243459 ggtttaaagtttgggattcatgttatgagagggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggta 39243545  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 22667513 - 22667543
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataagc 189  Q
    |||||||||||||||||||||||||||||||    
T  22667513 tgcttatgtcagtagataagctcaaataagc 22667543  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 22724152 - 22724182
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataagc 189  Q
    |||||||||||||||||||||||||||||||    
T  22724152 tgcttatgtcagtagataagctcaaataagc 22724182  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 5448556 - 5448584
Alignment:
Q  161 cttatgtcagtagataagctcaaataagc 189  Q
    |||||||||||||||||||||||||||||    
T  5448556 cttatgtcagtagataagctcaaataagc 5448584  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 28837313 - 28837273
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataagcaaattaaaaa 199  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  28837313 tgcttatgtcagtagataagctcaaataagccaatcaaaaa 28837273  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 6292602 - 6292631
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataag 188  Q
    ||||||||||||||||||||||||||||||    
T  6292602 tgcttatgtcagtagataagctcaaataag 6292631  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 41505786 - 41505814
Alignment:
Q  161 cttatgtcagtagataagctcaaataagc 189  Q
    |||||||||||||||||||||||||||||    
T  41505786 cttatgtcagtagataagctcaaataagc 41505814  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 21073247 - 21073281
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataagcaaat 193  Q
    |||||||||||||||||||||| ||||||||||||    
T  21073247 tgcttatgtcagtagataagcttaaataagcaaat 21073281  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 189
Target Start/End: Complemental strand, 11619117 - 11619088
Alignment:
Q  160 gcttatgtcagtagataagctcaaataagc 189  Q
    ||||||||||||||||||||||||||||||    
T  11619117 gcttatgtcagtagataagctcaaataagc 11619088  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 22759271 - 22759311
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataagcaaattaaaaa 199  Q
    |||||||| |||||||||||||||||||||  |||||||||    
T  22759271 tgcttatgccagtagataagctcaaataagtcaattaaaaa 22759311  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 3639128 - 3639094
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataagcaaat 193  Q
    |||||||||| ||||||||||||||||||||||||    
T  3639128 tgcttatgtcggtagataagctcaaataagcaaat 3639094  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 21157878 - 21157912
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataagcaaat 193  Q
    ||||||||||||||||| |||||||||||||||||    
T  21157878 tgcttatgtcagtagatgagctcaaataagcaaat 21157912  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 28615633 - 28615669
Alignment:
Q  158 atgcttatgtcagtagataagctcaaataagcaaatt 194  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  28615633 atgcttatgtcattagataagctcaaataagccaatt 28615669  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 47970406 - 47970434
Alignment:
Q  159 tgcttatgtcagtagataagctcaaataa 187  Q
    |||||||||||||||||||||||||||||    
T  47970406 tgcttatgtcagtagataagctcaaataa 47970434  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 32848557 - 32848528
Alignment:
Q  158 atgcttatgtcagtagataagctcaaataa 187  Q
    ||||||||||||||||||||||||||||||    
T  32848557 atgcttatgtcagtagataagctcaaataa 32848528  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 35069570 - 35069542
Alignment:
Q  161 cttatgtcagtagataagctcaaataagc 189  Q
    |||||||||||||||||||||||||||||    
T  35069570 cttatgtcagtagataagctcaaataagc 35069542  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 15015954 - 15015983
Alignment:
Q  160 gcttatgtcagtagataagctcaaataagc 189  Q
    ||||||||||||||||||||||||||||||    
T  15015954 gcttatgtcagtagataagctcaaataagc 15015983  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 15246945 - 15246977
Alignment:
Q  161 cttatgtcagtagataagctcaaataagcaaat 193  Q
    ||||||||||||||||||||||||||| |||||    
T  15246945 cttatgtcagtagataagctcaaataaacaaat 15246977  T

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