View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_high_20 (Length: 239)
Name: NF10419_high_20
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_high_20 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 664933 - 665142
Alignment:
| Q |
12 |
aagcaaaggtcaaaattcattttctgaaactgtcatgactcgctaggcgagcacatactcgccatagcgagcatattctcgcgaggcaagttgcagcagg |
111 |
Q |
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| T |
664933 |
aagcaaaagtcaaaattcattttctgaaactgtcatgactcgctaggcgagcacatactcgccatagcaagcatattctcgcgaggcaagttgcagcagg |
665032 |
T |
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| Q |
112 |
tcagtcacttttttatttctaggcagtacagacttcttttgcatggtttgattaaaggctatgtcataggtaacccttttgcactatggtataccacaag |
211 |
Q |
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| T |
665033 |
tcagtcacttttttatttctaggcagtacagacttcttttgcatggtttgattaaaggctatgtcataggtaacccttttgcactatggtataccacaag |
665132 |
T |
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| Q |
212 |
ctcctgctac |
221 |
Q |
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|||||||||| |
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| T |
665133 |
ctcctgctac |
665142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 4502332 - 4502183
Alignment:
| Q |
69 |
ctcgccatagcgagcatattctcgcgaggcaagttgcagcaggtcagtcacttttttatttctaggcagtacagacttcttttgcatggtttgattaaag |
168 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
4502332 |
ctcgccatagcgagcatattctcgcgaggcgagttgcagcaggtcagtcactttttgatttctaggcagtacatacttcttttgcattgtttgattaaag |
4502233 |
T |
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| Q |
169 |
gctatgtcataggtaacccttttgcactatggtataccacaagctcctgc |
218 |
Q |
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| T |
4502232 |
actatgtcataggtaacccttttgcactatggtataccacaagctcctgc |
4502183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 4502432 - 4502376
Alignment:
| Q |
20 |
gtcaaaattcattttctgaaactgtcatgactcgctaggcgagcacatactcgccat |
76 |
Q |
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| T |
4502432 |
gtcaaaattcattttctgaaactgtcatgactcgctaggcgagcacatactcgccat |
4502376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 204820 - 204668
Alignment:
| Q |
69 |
ctcgccatagcgagcatattctcgcgaggcaagttgcagcaggtcagtcacttttttatttctaggcagtacagacttcttttgcatggtttgattaaag |
168 |
Q |
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|||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
204820 |
ctcgccatagcgagcatattctcgcgagtcgagttgcagtaggtcagtcacttttttatttctaggcagtacagacttcttttgcattgtttgattaaag |
204721 |
T |
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| Q |
169 |
gctatgtcataggtaacccttttgcactatggtataccacaagctcctgctac |
221 |
Q |
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| T |
204720 |
gctatgtcatgggtaaccctttttcactatggtataccacaagctcctactac |
204668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 204920 - 204866
Alignment:
| Q |
20 |
gtcaaaattcattttctgaaactgtcatgactcgctaggcgagcacatactcgcc |
74 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
204920 |
gtcaaaattcattttctgaaactgtcatgactcgctaggcgagcacatactcgcc |
204866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 14119974 - 14120018
Alignment:
| Q |
69 |
ctcgccatagcgagcatattctcgcgaggcaagttgcagcaggtc |
113 |
Q |
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| T |
14119974 |
ctcgccatagcgagcatattctcgcgaggcgagttgcagcaggtc |
14120018 |
T |
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