View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10419_high_21 (Length: 229)
Name: NF10419_high_21
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_high_21 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 37375842 - 37375620
Alignment:
| Q |
7 |
gactagtccactgacatgcttggccatggctggtgtcacgctggttccaggagataaagaatacacaaagggacgattaatcttgctgagaacctggcat |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
37375842 |
gactagtccactgacatacttggccatggctggtgtcacaaaaattccaggagaaaaagaatacacaaagggacgattaaaatagctaagaacctggcat |
37375743 |
T |
|
| Q |
107 |
gacatgtcgtatgataagtttgtaaatcatagcgaaagcattgagatcgagtgtttttacaagaacaagtagtagtgatgaaagtaagatagttgaaact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37375742 |
gacatgtcgtatgataagtttgtaaatcatagcgaaagcattgagatcgagtgtttttacaagaacaagtagtagtgatgaaagtaagatagttgaaact |
37375643 |
T |
|
| Q |
207 |
gatcagaatacctcagatacata |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37375642 |
gatcagaatacctcagatacata |
37375620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 37383195 - 37382970
Alignment:
| Q |
7 |
gactagtccactgacatgcttggccatggctggtgtcacgctggttccaggagataaagaatacacaaagggacgattaatcttgctgagaacctggcat |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37383195 |
gactagtccactgacatacttggccatggctggtgtcacgcaggttccaggagataaagaatacacaaagggacgattaatcttactgagaacctggcaa |
37383096 |
T |
|
| Q |
107 |
gacatgtcgtatgataagtttgta---aatcatagcgaaagcattgaga--tcgagtgtttttacaagaacaagtagtagtgatgaaagtaagatagttg |
201 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||| || |||| ||||| |||| ||||| ||||||| |||||||||||||||||| ||| | |
|
|
| T |
37383095 |
gacatgtcgaatgataagtttgtaaataatcatagtgaaaatatagagatctcgagcgtttatacaaaaacaagtggtagtgatgaaagtaagaaagtgg |
37382996 |
T |
|
| Q |
202 |
aaactgatcagaatacctcagatacata |
229 |
Q |
| |
|
||||| | ||||||||||||||||||| |
|
|
| T |
37382995 |
aaactaa--agaatacctcagatacata |
37382970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 37367054 - 37367275
Alignment:
| Q |
11 |
agtccactgacatgcttggccatggctggtgtcacgctggttccaggagataaagaatacacaaagggacgattaatcttgctgagaacctggcatgaca |
110 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| | || ||| ||||||| |||||||| || ||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
37367054 |
agtccactgacttgcttggccatgtctggtgtggccttgactccgggagatagagaatacaaaagggggcgattaaccttgctgagaacctagcacgaca |
37367153 |
T |
|
| Q |
111 |
tgtcgtatgataagtttgta---aatcatagcgaaagcattgaga--tcgagtgtttttacaagaacaagtagtagtgatgaaagtaagatagttgaaac |
205 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||||||||| | ||||| || |||||| ||||||||||||| | | ||||| |
|
|
| T |
37367154 |
tgtcgtatgataagtttgtagataattgtagcgaaaatattgagatctcgagtgtttattcaagagaaaatagtagagatgaaagtaagaaactggaaac |
37367253 |
T |
|
| Q |
206 |
tgatcagaatacctcagatacata |
229 |
Q |
| |
|
||| ||| |||||||||| |||| |
|
|
| T |
37367254 |
tga--agattacctcagattcata |
37367275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 37361008 - 37360787
Alignment:
| Q |
11 |
agtccactgacatgcttggccatggctggtgtcacgctggttccaggagataaagaatacacaaagggacgattaatcttgctgagaacctggcatgaca |
110 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| | || ||| ||||||| |||||||| || ||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
37361008 |
agtccactgacttgcttggccatgtctggtgtggccttgactccgggagatagagaatacaaaagggggcgattaaccttgctgagaacctagcacgaca |
37360909 |
T |
|
| Q |
111 |
tgtcgtatgataagtttgta---aatcatagcgaaagcattgaga--tcgagtgtttttacaagaacaagtagtagtgatgaaagtaagatagttgaaac |
205 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||| |||||||||| | ||||| || |||||| ||||||||||||| | | ||||| |
|
|
| T |
37360908 |
agtcgtatgataagtttgtagataattgtagcgaaaatattgagatctcgagtgtttattcaagagaaaatagtagagatgaaagtaagaaactggaaac |
37360809 |
T |
|
| Q |
206 |
tgatcagaatacctcagatacata |
229 |
Q |
| |
|
||| ||| |||||||||| |||| |
|
|
| T |
37360808 |
tga--agattacctcagatgcata |
37360787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 41229349 - 41229480
Alignment:
| Q |
7 |
gactagtccactgacatgcttggccatggctggtgtcacgctggttccaggagataaagaatacacaaagggacgattaatcttgctgagaacctggcat |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||| ||||||||||| | ||| |||||||||||| |
|
|
| T |
41229349 |
gactagtccactgacatccttggccatggctggtgtcacatcttttccgggagacagagaatacacaatgggacgattaaattggctcagaacctggcat |
41229448 |
T |
|
| Q |
107 |
gacatgtcgtatgataagtttgtaaatcatag |
138 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||| |
|
|
| T |
41229449 |
gacatgtcacatgaaaagtttgaaaataatag |
41229480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 39244712 - 39244595
Alignment:
| Q |
11 |
agtccactgacatgcttggccatggctggtgtcacgctggttccaggagataaagaatacacaaagggacgattaatcttgctgagaacctggcatgaca |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || ||||| ||||| |||||||| |||| ||| |||| || || | ||||||||| ||||| |
|
|
| T |
39244712 |
agtccactgacatccttggccatggctggtgtcacacttgttccgggagacaaagaatagacaatggggcgatcaaactcccggagaacctgcagtgaca |
39244613 |
T |
|
| Q |
111 |
tgtcgtatgataagtttg |
128 |
Q |
| |
|
| || |||| |||||||| |
|
|
| T |
39244612 |
tatcatatggtaagtttg |
39244595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University