View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10419_high_23 (Length: 208)
Name: NF10419_high_23
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 27445900 - 27446076
Alignment:
| Q |
14 |
cacagaatccatcaaggaattgtttccacaaaaacttgtagatctatctatatatactcattatgactatctcaagcagcaacacaattcaagttactca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27445900 |
cacagaatccatcaaggaattgtttccacaaaaacttgtagatctatctatatatactcattatgactatctcaagcagcaacacaattcaagttactca |
27445999 |
T |
|
| Q |
114 |
caaatacaaattcaaatatttctttcttacatacacaagctgttagtgtgttgtaactcataataacaatgggcttt |
190 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27446000 |
caaatacaaattaaaatatttctttcttacatacacaagatgttagtgtgttgtaactcataataacaatgggcttt |
27446076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 27556735 - 27556638
Alignment:
| Q |
61 |
ctatatatactcattatgactatctcaagcagcaacacaattcaagttactcac-aaatacaaattcaaatatttctttcttacatacacaagctgtt |
157 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
27556735 |
ctatatatactcattatgacattcttaagcagcaatacaattcaagtcactcacaaaatacaaattcaaatatttctttctttcatacaaaagctgtt |
27556638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University