View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10419_low_10 (Length: 410)

Name: NF10419_low_10
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10419_low_10
NF10419_low_10
[»] chr6 (8 HSPs)
chr6 (1-322)||(1071269-1071591)
chr6 (1-232)||(19440320-19440552)
chr6 (1-232)||(19427951-19428183)
chr6 (39-235)||(17026550-17026745)
chr6 (44-257)||(22347200-22347409)
chr6 (70-108)||(14995515-14995552)
chr6 (138-207)||(1589964-1590032)
chr6 (180-232)||(14725178-14725230)
[»] chr3 (7 HSPs)
chr3 (1-293)||(31689875-31690167)
chr3 (1-322)||(8373156-8373457)
chr3 (40-293)||(31944098-31944351)
chr3 (140-208)||(15232995-15233062)
chr3 (140-208)||(15238863-15238930)
chr3 (138-208)||(11325229-11325298)
chr3 (140-208)||(8927740-8927807)
[»] chr8 (11 HSPs)
chr8 (1-322)||(14567636-14567958)
chr8 (1-322)||(14564103-14564425)
chr8 (100-260)||(21282766-21282925)
chr8 (1-232)||(21669426-21669639)
chr8 (126-232)||(10607650-10607755)
chr8 (119-222)||(23646886-23646989)
chr8 (140-190)||(19989761-19989810)
chr8 (1-81)||(19989652-19989733)
chr8 (43-232)||(21299470-21299659)
chr8 (140-208)||(20387289-20387356)
chr8 (140-208)||(22617438-22617505)
[»] chr2 (4 HSPs)
chr2 (100-322)||(45029113-45029334)
chr2 (313-395)||(278893-278975)
chr2 (56-293)||(38929119-38929354)
chr2 (43-223)||(22795961-22796141)
[»] chr7 (8 HSPs)
chr7 (1-322)||(11298940-11299264)
chr7 (1-322)||(11307304-11307628)
chr7 (1-322)||(46650330-46650633)
chr7 (108-260)||(36305373-36305524)
chr7 (85-213)||(41781218-41781345)
chr7 (155-232)||(1613373-1613450)
chr7 (1-93)||(36305519-36305612)
chr7 (138-207)||(15726129-15726197)
[»] chr4 (8 HSPs)
chr4 (1-322)||(41404005-41404312)
chr4 (1-232)||(26077069-26077301)
chr4 (1-260)||(13898987-13899235)
chr4 (1-257)||(27848819-27849076)
chr4 (70-257)||(3863418-3863604)
chr4 (70-257)||(3872175-3872361)
chr4 (70-125)||(40909139-40909192)
chr4 (140-208)||(32490547-32490614)
[»] scaffold0026 (1 HSPs)
scaffold0026 (28-260)||(66887-67119)
[»] scaffold0106 (2 HSPs)
scaffold0106 (1-260)||(36747-37006)
scaffold0106 (1-260)||(29153-29412)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-260)||(1334-1591)
[»] chr5 (3 HSPs)
chr5 (1-293)||(26754134-26754426)
chr5 (140-192)||(26707178-26707229)
chr5 (140-192)||(26976912-26976963)
[»] scaffold0322 (1 HSPs)
scaffold0322 (39-235)||(19898-20093)
[»] scaffold0335 (1 HSPs)
scaffold0335 (62-257)||(7793-7985)
[»] scaffold0042 (1 HSPs)
scaffold0042 (4-188)||(53503-53687)
[»] scaffold0562 (1 HSPs)
scaffold0562 (70-257)||(2994-3180)
[»] scaffold0160 (1 HSPs)
scaffold0160 (120-226)||(15636-15742)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-239)||(152952-153192)
[»] scaffold0535 (2 HSPs)
scaffold0535 (120-232)||(5362-5474)
scaffold0535 (1-88)||(5503-5591)
[»] scaffold0395 (1 HSPs)
scaffold0395 (44-235)||(1514-1705)
[»] chr1 (1 HSPs)
chr1 (146-208)||(21526963-21527025)
[»] scaffold1913 (1 HSPs)
scaffold1913 (157-226)||(653-722)
[»] scaffold0061 (1 HSPs)
scaffold0061 (119-232)||(56511-56623)
[»] scaffold0017 (1 HSPs)
scaffold0017 (119-232)||(142010-142122)
[»] scaffold0610 (2 HSPs)
scaffold0610 (180-231)||(6344-6395)
scaffold0610 (43-92)||(6207-6256)
[»] scaffold0371 (1 HSPs)
scaffold0371 (142-190)||(8329-8376)
[»] scaffold0203 (1 HSPs)
scaffold0203 (180-232)||(16574-16626)
[»] scaffold0090 (1 HSPs)
scaffold0090 (140-208)||(31628-31695)
[»] scaffold0016 (1 HSPs)
scaffold0016 (140-208)||(182229-182296)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 1071269 - 1071591
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| |||||||| ||| ||| |||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |    
T  1071269 atggcgaactaaggcagtgttctcgggaaactttctggacactttcgcaagggcgaaccaatggcgagggaatggcgaaatttcgccaggcgaaaatgac 1071368  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaa-tttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    ||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||| ||||||||| |||||  |||||||||||||||||||||| ||||    
T  1071369 ttcgccagggcgaatcgtgacagttccagaatcgtgaattttgtagtttttcatc-aaaaatccc-attttttccaatccaaaccccaaaacaggctaca 1071466  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcctctacttttctatttctaggaatcgaaatcaaaaatcca 298  Q
    ||||||||||||||| ||| |||||||||||||||||   || || ||  |||||||||||| ||| |||||| || |||||||| |||||||||| |||    
T  1071467 gtaatgttatgcaatcctaaaatcgcccagaacacaactaagtccaaaacaacatggttcctatacatttctaattttaggaatcaaaatcaaaaaccca 1071566  T
Q  299 -tcttctcccattctcaccaaaacc 322  Q
     | || |||||||||||||||||||    
T  1071567 tttttttcccattctcaccaaaacc 1071591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 19440320 - 19440552
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    ||||||||||||| |||||| |||||||| ||| ||| ||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| ||    
T  19440320 atggcgaactaagtcagtgttctcgggaaactttctggacactttcgccagggcgaaccaatggcgagggaatgacgaaattttgccaggcgaaaattgc 19440419  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacag 199  Q
    ||| ||||||||| ||||| ||||| ||||||| |||||||| |||||| || ||||||  ||||||||| |||||| || ||||||||| | |||| ||    
T  19440420 ttcaccagggcgaatcgtgtcagtttcagaatcgtgaatttgtagttttccaccaaaaacccccaatttttcccaattcataccccaaaaaatgttatag 19440519  T
Q  200 taatgttatgcaattctagaatcgcccagaaca 232  Q
    ||||||||||||||  || |||||||| |||||    
T  19440520 taatgttatgcaatcttaaaatcgcccggaaca 19440552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 19427951 - 19428183
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||  ||||| |||||||| ||| ||| ||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||| ||    
T  19427951 atggcgaactaagtaagtgttctcgggaaactttctggacactttcgccagggcgaaccaacggcgagggaatggcgaaattttgccaggcgaaaattgc 19428050  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacag 199  Q
    ||| ||||||||| ||||| |||||  ||||||||||||||| |||||| || ||||||  || |||||| |||||| || ||||||||||||| || ||    
T  19428051 ttcaccagggcgaatcgtgtcagttttagaatcatgaatttgtagttttccaccaaaaacccctaatttttcccaattcataccccaaaacaggctatag 19428150  T
Q  200 taatgttatgcaattctagaatcgcccagaaca 232  Q
    |||||||||||||| ||| |||| ||| |||||    
T  19428151 taatgttatgcaatcctaaaatctcccggaaca 19428183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 17026745 - 17026550
Alignment:
Q  39 cactttcgccagggtggaccaatggcgagggaatggcgaaat--ttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatga 136  Q
    |||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||  |||||||||| ||||||||  |||||| ||| || |||    
T  17026745 cactttcgccagggcgaaccaatggcgagggaatggcgaaatatttcgccaggcgaaaatt-cttcgccagg-cgagtcgtatcagttc-agactcgtga 17026649  T
Q  137 atttgcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaa 235  Q
    ||||| ||||| |||| |||||| |||| ||||| |||||| ||| ||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||    
T  17026648 atttgtagtttcttcaccaaaaa-tccccatttttcccaattcaatccccaaaacagtttacagtaatgttatgcaatcctaaaatcgccctgaacacaa 17026550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 257
Target Start/End: Original strand, 22347200 - 22347409
Alignment:
Q  44 tcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgc 142  Q
    ||||||||| | ||||| ||||||| || ||||  ||||| ||||||||||||  |||||| ||| | ||||||| |||||| ||| || |||||| |||    
T  22347200 tcgccagggcgaaccaaaggcgaggaaa-ggcgctatttcaccaggcgaaaata-cttcgctagg-caagtcgtgtcagttc-agactcgtgaattctgc 22347295  T
Q  143 agtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaaactaggc 242  Q
    ||||||||| |||||| |||| |||||||||||| ||| ||||||||| | |||||||| ||||||| ||| ||| ||||| || |||||||| ||| |     
T  22347296 agtttttcaccaaaaa-tccccattttccccaattcaatccccaaaactgtttacagtattgttatgaaatcctaaaatcgacctgaacacaatctaagt 22347394  T
Q  243 ccaattaacatggtt 257  Q
     ||||||||||||||    
T  22347395 acaattaacatggtt 22347409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 14995552 - 14995515
Alignment:
Q  70 aatggcgaaatttcgccaggcgaaaatggcttcgccagg 108  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  14995552 aatggcgaaatttcgccaggcgaaaat-gcttcgccagg 14995515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 1590032 - 1589964
Alignment:
Q  138 tttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgtta 207  Q
    |||||||||||||| |||||  ||||||||||||||||| ||| ||||||||| | |||||  |||||||    
T  1590032 tttgcagtttttcaccaaaat-tcccaattttccccaattcaatccccaaaactgattacaacaatgtta 1589964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 14725178 - 14725230
Alignment:
Q  180 aaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaaca 232  Q
    ||||||||||| | |||||||||||||||||| | ||| |||||||| |||||    
T  14725178 aaccccaaaacggtttacagtaatgttatgcattcctaaaatcgcccggaaca 14725230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 31690167 - 31689875
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaa-tggcgaaatttcgccaggcgaaaatgg 98  Q
    ||||||||||||| |||||| |||||||| |||  || ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  31690167 atggcgaactaagtcagtgttctcgggaaactttatggacactttcgccagggcggaccaatggcgagggaaatggcgaaatttcgccaggcgaaaatgg 31690068  T
Q  99 cttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||  ||||| |||||||||||||||||||||    
T  31690067 tttcgccagggcgagtcgtgacagttccagaatcgtgaatttgcagtttttca-ccaaaaaccccaatttt-tccaattcaaaccccaaaacaggttaca 31689970  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcctctacttttctatttctaggaatcgaaatcaaaa 293  Q
    ||||||||||||||| ||| ||||| || |||||||| ||| |  ||||||||||||||||| ||| |||  | ||| || ||||||||||||||    
T  31689969 gtaatgttatgcaatcctaaaatcggcctgaacacaatctaagttcaattaacatggttcctatacattttcaattcaagaaatcgaaatcaaaa 31689875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 8373457 - 8373156
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| |||||||| ||| ||||||||| ||||||||| | ||||| ||||||||||||| ||||||||||||                
T  8373457 atggcgaactaaggcagtgttctcgggaaactttctgaacactctcgccagggcgaaccaaaggcgagggaatggtgaaatttcgcca------------ 8373370  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacag 199  Q
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  8373369 -------gggcgagtcgtgacagttccagaatcgtgaatttgcagtttttcatcaaaaa-tcccaattttccccaattcaaaccccaaaacaggttacag 8373278  T
Q  200 taatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcctctacttttctatttctaggaatcgaaatcaaaaatccat 299  Q
    |||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||| |||  ||||| |||||| |||| ||||| |||| ||||    
T  8373277 taatgttatgcaatcctagaatcgcccagaacacaagctaagtccaattaacatggttcctatacacttctaattctagaaatcaaaatc-aaaacccat 8373179  T
Q  300 cttctcccattctcaccaaaacc 322  Q
     ||||||||||||||||||||||    
T  8373178 tttctcccattctcaccaaaacc 8373156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 40 - 293
Target Start/End: Original strand, 31944098 - 31944351
Alignment:
Q  40 actttcgccagggtggaccaatggcgagggaa-tggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatgaat 138  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||    
T  31944098 actttcgccagggcgaaccaatggcgagggaaatggcgaaatttcgccaggcgaaaatggtttcgccagggcgaatcgtgacagttccagaatcgtgaat 31944197  T
Q  139 ttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaaact 238  Q
    ||||||||||||| | ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||| ||    
T  31944198 ttgcagtttttca-ccaaaaaccccaatttttcccaattcaaaccccaaaacaggttacagtaatgttatgcaatcctaaaatcggcctgaacacaatct 31944296  T
Q  239 aggcccaattaacatggttcctctacttttctatttctaggaatcgaaatcaaaa 293  Q
    | |  ||||||||||||||||| ||| |||  | ||| || ||||||||||||||    
T  31944297 aagttcaattaacatggttcctatacattttcaattcaagaaatcgaaatcaaaa 31944351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 15232995 - 15233062
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| |||||| | ||||||    
T  15232995 tgcagtttttca-caaaaagtcccaattttccccaattcaatccccaaaacagattacagaagtgttat 15233062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 15238863 - 15238930
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| |||||| | ||||||    
T  15238863 tgcagtttttca-caaaaagtcccaattttccccaattcaatccccaaaacagattacagaagtgttat 15238930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 11325298 - 11325229
Alignment:
Q  138 tttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||||| |||||  ||||||||||||||||| ||| ||||||||| | |||||| | ||||||    
T  11325298 tttgcagtttttcaccaaaag-tcccaattttccccaattcaatccccaaaactgattacagaagtgttat 11325229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 8927807 - 8927740
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||| |||||| ||||||||||||||||| ||| || |||||| | |||||  ||||||||    
T  8927807 tgcagtttttcaccaaaaa-tcccaattttccccaattcaatcctcaaaactgattacaacaatgttat 8927740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 14567636 - 14567958
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| |||||||| ||| ||| || ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |    
T  14567636 atggcgaactaaggcagtgttctcgggaaactttctggacgctttcgctagggcgaaccaatggcgagggaatggcgaaatttcgccaggcgaaaatgac 14567735  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaa-tttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    || |||||||||| ||||||||||||||||||| |||| |||| ||||||||||| |||||||||| |||| ||||||| ||||||||||||||| ||||    
T  14567736 tttgccagggcgaatcgtgacagttccagaatcgtgaattttgtagtttttcatc-aaaaatcccattttttcccaatctaaaccccaaaacaggctaca 14567834  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggccc--aattaacatggttcctctacttttctatttctaggaatcgaaatcaaaaatc 296  Q
    ||||||||||||||| ||| ||||||||||||||| ||||| | ||  ||  |||||| ||||| |||  ||||| || |||||||| |||||||||| |    
T  14567835 gtaatgttatgcaatcctaaaatcgcccagaacac-aactaagtccaaaaacaacatgattcctatacacttctaattttaggaatcaaaatcaaaaacc 14567933  T
Q  297 catcttctcccattctcaccaaaacc 322  Q
    ||| || | |||||||||||||||||    
T  14567934 cat-tttttccattctcaccaaaacc 14567958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 14564103 - 14564425
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| |||||||| ||| ||| || ||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||| |    
T  14564103 atggcgaactaaggcagtgttctcgggaaactttctggacgctttcgctagggcgaaccaatggcgagggaatggcgaaatttcgccaggggaaaatgac 14564202  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaa-tttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    || |||||||||| ||||||||||||||||||| |||| |||| ||||||||||| |||||||||| |||| ||||||| ||||||||||||||| ||||    
T  14564203 tttgccagggcgaatcgtgacagttccagaatcgtgaattttgtagtttttcatc-aaaaatcccattttttcccaatctaaaccccaaaacaggctaca 14564301  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggccc--aattaacatggttcctctacttttctatttctaggaatcgaaatcaaaaatc 296  Q
    ||||||||||||||| ||| ||||||||||||||| ||||| | ||  ||  |||||| ||||| |||  ||||| || |||||||| |||||||||| |    
T  14564302 gtaatgttatgcaatcctaaaatcgcccagaacac-aactaagtccaaaaacaacatgattcctatacacttctaattttaggaatcaaaatcaaaaacc 14564400  T
Q  297 catcttctcccattctcaccaaaacc 322  Q
    ||| || | |||||||||||||||||    
T  14564401 cat-tttttccattctcaccaaaacc 14564425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 100 - 260
Target Start/End: Original strand, 21282766 - 21282925
Alignment:
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacag 199  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  21282766 ttcgccagggcgaatcgtgacagttccagaatcgtgaatttgcagtttttcaccaaaa-atcccaattttcctcaattcaaaccccaaaacaggttacag 21282864  T
Q  200 taatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcct 260  Q
    |||||||||||||| ||| ||||| || ||| |||| ||| |   ||||||||||||||||    
T  21282865 taatgttatgcaatcctaaaatcggcctgaatacaatctaagtttaattaacatggttcct 21282925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 21669426 - 21669639
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    ||||||||||||| |||||| |||||||| ||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |  |||         
T  21669426 atggcgaactaagtcagtgttctcgggaaactttctggacactttcgccagggcgaaccaatggcgagggaatggcgaaatttcgccatggcaaa----- 21669520  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacag 199  Q
                  ||||| ||||| ||||||| |||||||| ||||||||| ||||||  ||||||||| |||||| || |||||||||||||||| ||    
T  21669521 --------------tcgtgtcagtttcagaatcgtgaatttgtagtttttcaccaaaaacccccaatttttcccaattcataccccaaaacaggttatag 21669606  T
Q  200 taatgttatgcaattctagaatcgcccagaaca 232  Q
    |||||||||||||| ||| |||||||| |||||    
T  21669607 taatgttatgcaatcctaaaatcgcccggaaca 21669639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 10607650 - 10607755
Alignment:
Q  126 cagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcc 225  Q
    ||||||| ||||||||||||||||   | |||| ||||||||||||||||| |||| |||||||| | |||||||||||||||||||| ||| |||||||    
T  10607650 cagaatcgtgaatttgcagttttttcaccaaaagtcccaattttccccaattcaaa-cccaaaacggtttacagtaatgttatgcaatcctaaaatcgcc 10607748  T
Q  226 cagaaca 232  Q
    | |||||    
T  10607749 cggaaca 10607755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 23646989 - 23646886
Alignment:
Q  119 acagttccagaatcatgaatttgcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattcta 217  Q
    |||||| ||||||| |||||||||||||| |||| |||||| |||| ||||| |||||| ||||||| ||||||| ||||||||||||||| |||| |||    
T  23646989 acagtttcagaatcgtgaatttgcagtttcttcaccaaaaa-tccccatttttcccaattcaaacccgaaaacagtttacagtaatgttatacaatccta 23646891  T
Q  218 gaatc 222  Q
     ||||    
T  23646890 aaatc 23646886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 19989761 - 19989810
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaac 190  Q
    |||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  19989761 tgcagtttttcaccaaaa-atcccaattttccccaatccaatccccaaaac 19989810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 19989652 - 19989733
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaacttc-ctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatt 81  Q
    |||| ||||||||||||||  |||||||| ||  |||  |||||| ||||||||| |||||||| || ||||||||||||||    
T  19989652 atggtgaactaaggcagtgctctcgggaaatttactgggcacttttgccagggtgaaccaatggtgaaggaatggcgaaatt 19989733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 21299659 - 21299470
Alignment:
Q  43 ttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggctt--cgccagggcgagtcgtgacagttccagaatcatgaattt 140  Q
    |||||||||| | |||||||||||| ||| ||| ||||| |||||||||| |||  | |  |||||||  || || |||||||||||||||| ||||||     
T  21299659 ttcgccagggcgaaccaatggcgagcgaaaggcaaaattccgccaggcgagaataccattccgccaggtgga-tcatgacagttccagaatcgtgaatt- 21299562  T
Q  141 gcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaaca 232  Q
    ||||    |||| ||||| | |||| ||||||| | | ||| ||||||||| | |||||||||||||||||||| ||| ||||| || |||||    
T  21299561 gcagacccttcaccaaaagaccccatttttcccaatttcaa-ccccaaaacggtttacagtaatgttatgcaatcctaaaatcgtccggaaca 21299470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 20387289 - 20387356
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||| |||||  ||||||||||||||||| ||| ||||||||| | |||||| | ||||||    
T  20387289 tgcagtttttcaccaaaag-tcccaattttccccaattcaatccccaaaactgattacagaagtgttat 20387356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 22617438 - 22617505
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||| |||||  ||||||||||||||||| ||| ||||||||| | |||||| | ||||||    
T  22617438 tgcagtttttcaccaaaag-tcccaattttccccaattcaatccccaaaactgattacagaagtgttat 22617505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 100 - 322
Target Start/End: Original strand, 45029113 - 45029334
Alignment:
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacag 199  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45029113 ttcgccagggcgagtcgtgacagttccagaatcgtgaatttgcagtttttcatcaaaa-atcccaattttccccaatccaaaccccaaaacaggttacag 45029211  T
Q  200 taatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcctcta-cttttctatttctaggaatcgaaatcaaaaatcca 298  Q
    ||||||||||||||  |||||||||||||||||| ||||| | ||||| |||||||||||| ||  ||||||| || ||| |||| |||||||||| |||    
T  45029212 taatgttatgcaatcttagaatcgcccagaacac-aactaagtccaataaacatggttcctgtatattttctaattttagaaatcaaaatcaaaaaccca 45029310  T
Q  299 tcttctcccattctcaccaaaacc 322  Q
    |||| |||||||||||||||||||    
T  45029311 tcttttcccattctcaccaaaacc 45029334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 278975 - 278893
Alignment:
Q  313 caccaaaaccagttccagttaggaaaactgtcccctcaaccaagcatgaacaagaagaatctaatgaccacaattgttgtccc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  278975 caccaaaaccagttccagttaggaaaactgtcccctcaaccaagcatgaacaagaagaatctaatgaccacaattgttgtccc 278893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 56 - 293
Target Start/End: Complemental strand, 38929354 - 38929119
Alignment:
Q  56 accaatggcgagggaatggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatgaa-tttgcagtttttcatca 154  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||   || || |||| |||||| ||||||| |     
T  38929354 accaatggcgagggaatggtgaaatttcgccaggtgaaaatggcttcgctagggcgagtcgtgagagtt-atgactcgtgaattttgca-tttttca-cc 38929258  T
Q  155 aaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatg 254  Q
    ||||||||||||||| |||||| ||| ||||||||| | |||||| | | ||||| ||| ||| ||||| || |||||||| ||| |  |||||||||||    
T  38929257 aaaaatcccaatttttcccaattcaatccccaaaactgtttacagcattattatgaaatcctaaaatcggcctgaacacaatctaagttcaattaacatg 38929158  T
Q  255 gttcctctacttttctatttctaggaatcgaaatcaaaa 293  Q
    |||||| ||| |||  | ||| || |||| |||||||||    
T  38929157 gttcctatacattttcaattcaagaaatcaaaatcaaaa 38929119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 22796141 - 22795961
Alignment:
Q  43 ttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggctt--cgccagggcgagtcgtgacagttccagaatcatgaattt 140  Q
    |||||||||| | |||||||||||| ||| ||||| ||||||||||||||||||    |  |||||||  ||| | | |||||| ||||||| ||||||     
T  22796141 ttcgccagggcgaaccaatggcgagtgaaaggcgacatttcgccaggcgaaaatactattccgccaggcggag-cataacagtttcagaatcgtgaatt- 22796044  T
Q  141 gcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcg 223  Q
    ||||||| |||| ||||| | |||| ||||||| | ||||| ||||||||| | |||||||||||||||||||| ||| |||||    
T  22796043 gcagtttcttcaccaaaagaccccatttttcccaattccaa-ccccaaaacggtttacagtaatgttatgcaatcctaaaatcg 22795961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 11299264 - 11298940
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| || ||||| ||| ||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |    
T  11299264 atggcgaactaaggcagtgttcttgggaaactttctggacactttcgccagggcgaaccaaaggcgagggaatggcgaaatttcgccaggcgaaaatgac 11299165  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaa-tttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    ||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||| ||||||||| |||||  |||||||||||||||||||||| ||||    
T  11299164 ttcgccagggcgaatcgtgacagttccagaatcgtgaattttgtagtttttcatc-aaaaatccc-attttttccaatccaaaccccaaaacaggctaca 11299067  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggccc--aattaacatggttcctctacttttctatttctaggaatcgaaatcaaaaatc 296  Q
    |  |||||||||||| ||| ||||||||||||||| ||||| | ||  ||  |||||| ||||| |||  ||||| || |||||||| |||||||||| |    
T  11299066 gacatgttatgcaatcctaaaatcgcccagaacac-aactaagtccaaaaacaacatgattcctatacacttctaattttaggaatcaaaatcaaaaacc 11298968  T
Q  297 ca--tcttctcccattctcaccaaaacc 322  Q
    ||  | || |||||||||||||||||||    
T  11298967 cattttttttcccattctcaccaaaacc 11298940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 11307628 - 11307304
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| || ||||| ||| ||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |    
T  11307628 atggcgaactaaggcagtgttcttgggaaactttctggacactttcgccagggcgaaccaaaggcgagggaatggcgaaatttcgccaggcgaaaatgac 11307529  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaa-tttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    ||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||| ||||||||| |||||  |||||||||||||||||||||| ||||    
T  11307528 ttcgccagggcgaatcgtgacagttccagaatcgtgaattttgtagtttttcatc-aaaaatccc-attttttccaatccaaaccccaaaacaggctaca 11307431  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggccc--aattaacatggttcctctacttttctatttctaggaatcgaaatcaaaaatc 296  Q
    |  |||||||||||| ||| ||||||||||||||| ||||| | ||  ||  |||||| ||||| |||  ||||| || |||||||| |||||||||| |    
T  11307430 gacatgttatgcaatcctaaaatcgcccagaacac-aactaagtccaaaaacaacatgattcctatacacttctaattttaggaatcaaaatcaaaaacc 11307332  T
Q  297 ca--tcttctcccattctcaccaaaacc 322  Q
    ||  | || |||||||||||||||||||    
T  11307331 cattttttttcccattctcaccaaaacc 11307304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 46650330 - 46650633
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||         
T  46650330 atggcgaactaaggcagtgttctcgggaaactttctggacactttcgccagggcgaaccaatggcgagggaatggcgaaatttcgccaggcgaaat---- 46650425  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaattt-gcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
                    ||||||||||||||||| ||||||| | |||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||    
T  46650426 ----------------gtgacagttccagaatcgtgaattttgtagtttttcatcaaaaa-tcccattttttcccaatccaaaccccaaaacaggctaca 46650508  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcctctacttttctatttctaggaatcgaaatcaaaaatcca 298  Q
    ||||||||||||||| ||| |||||||||||||||||   || || ||  |||||||||||| ||| |||||| || |||||||| |||||||||| |||    
T  46650509 gtaatgttatgcaatcctaaaatcgcccagaacacaactaagtccaaaacaacatggttcctatacatttctaattttaggaatcaaaatcaaaaaccca 46650608  T
Q  299 -tcttctcccattctcaccaaaacc 322  Q
     | || |||||||||||||||||||    
T  46650609 tttttttcccattctcaccaaaacc 46650633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 36305524 - 36305373
Alignment:
Q  108 ggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgtta 207  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  36305524 ggcgaatcgtgacagttccagaatcgtgaatttgcagtgtttcaccaaaaa-tcccaattttcctcaattcaaaccccaaaacaggttacagtaatgtta 36305426  T
Q  208 tgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcct 260  Q
    |||||| ||| ||||| || |||||||| ||| |  |||||||| ||||||||    
T  36305425 tgcaatcctaaaatcggcctgaacacaatctaagttcaattaacttggttcct 36305373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 41781345 - 41781218
Alignment:
Q  85 ccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattttccccaatccaaacc 183  Q
    |||||||||||| |||||| |||||||||||||| ||||| |||| || |||||| |||||||||||| | |||||||||  ||||||||||| ||| ||    
T  41781345 ccaggcgaaaattgcttcgtcagggcgagtcgtgtcagtt-cagactcgtgaattctgcagtttttca-ccaaaaatcccctttttccccaattcaatcc 41781248  T
Q  184 ccaaaacaggttacagtaatgttatgcaat 213  Q
    ||||| | | |||||||| |||||||||||    
T  41781247 ccaaacctgtttacagtattgttatgcaat 41781218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 1613373 - 1613450
Alignment:
Q  155 aaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaaca 232  Q
    ||||||||| ||||| |||||| ||| ||||||||||| |||||||||||||||||||| ||| |||||||| |||||    
T  1613373 aaaaatccccatttttcccaattcaatccccaaaacagtttacagtaatgttatgcaatcctaaaatcgcccggaaca 1613450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 36305612 - 36305519
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaa 93  Q
    ||||||| |||||||||||| |||||||| ||| |||  ||  |||||||||| | ||||||||||||  || ||||| |||||||||||||||    
T  36305612 atggcgagctaaggcagtgttctcgggaaactttctgggcagcttcgccagggcgaaccaatggcgagcaaaaggcgacatttcgccaggcgaa 36305519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 15726129 - 15726197
Alignment:
Q  138 tttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgtta 207  Q
    |||||||||||||| |||||  ||||||||||||||||| ||| ||||||||| | |||||  |||||||    
T  15726129 tttgcagtttttcaccaaaat-tcccaattttccccaattcaatccccaaaactgattacaacaatgtta 15726197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 41404312 - 41404005
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaac--ttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatgg 98  Q
    |||||||||||||||||||| ||||||||   || ||| |||| |||||||||||| ||||||||||||||||||||||||               ||||    
T  41404312 atggcgaactaaggcagtgttctcgggaaaaatttctggacacattcgccagggtgaaccaatggcgagggaatggcgaaa---------------atgg 41404228  T
Q  99 cttcgccagggcgagtcgtgacagttccagaatcatgaattt-gcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttac 197  Q
    |||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  41404227 cttcgccagggccagtcgtgacagttccagaatcgtgaattttgtagtttttcattaaaaa-tcccaatttttcccaatccaaaccccaaaacaggttac 41404129  T
Q  198 agtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcctctacttttctatttctaggaatcgaaatcaaaaatcc 297  Q
    |||||||||||| ||| |||||||||||||||||||||   || |  || ||||||||||||| ||| |||||| || ||| |||| |||||||||| ||    
T  41404128 agtaatgttatgtaatcctagaatcgcccagaacacaactaagtctaaaataacatggttcctatacatttctaatt-tagaaatcaaaatcaaaaaccc 41404030  T
Q  298 atcttctcccattctcaccaaaacc 322  Q
    ||||| |||||||||||||||||||    
T  41404029 atcttttcccattctcaccaaaacc 41404005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26077301 - 26077069
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    ||||||||||||| |||||| ||| |||| |||  || |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||     
T  26077301 atggcgaactaagtcagtgttctctggaaactttttggacactttcgccatggcgaaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggt 26077202  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacag 199  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||  ||||||||| |||||| || |||||||||||||||| ||    
T  26077201 ttcgccagggcgagttgtgacagttccagaatcgtgaatttgcaatttttcaccaaaaatccccaatttttcccaattcataccccaaaacaggttatag 26077102  T
Q  200 taatgttatgcaattctagaatcgcccagaaca 232  Q
    |||||||||||||| ||| ||||| || |||||    
T  26077101 taatgttatgcaatcctaaaatcgtccggaaca 26077069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 13899235 - 13898987
Alignment:
Q  1 atggcgaactaaggcagtgtcctcggg-aacttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| |||||| ||||| |||  |||||||||||||| | |||           ||||||||||||||||||||||||||||||    
T  13899235 atggcgaactaaggcagtgttctcgggaaacttactgggcactttcgccagggcgaacc-----------aatggcgaaatttcgccaggcgaaaatggc 13899147  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    ||||||||||||||||||||||||| | || || |||||| |||| ||||||| | |||||||||||||||||||||| ||| ||||||||| | |||||    
T  13899146 ttcgccagggcgagtcgtgacagtt-ctgactcgtgaattctgcattttttca-ccaaaaatcccaattttccccaattcaatccccaaaactgtttaca 13899049  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcct 260  Q
      | | ||||| ||| ||| ||| | || |||||||| ||| |  |||||||||||||||||    
T  13899048 acattattatgaaatcctaaaattggcctgaacacaatctaagttcaattaacatggttcct 13898987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 27849076 - 27848819
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaacttc--ctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatgg 98  Q
    ||||||||||||| |||||| |||||||| | |  |||  |||| ||||||||| | || || |||||||||| ||||  | ||| | |||||||||| |    
T  27849076 atggcgaactaagtcagtgttctcgggaattcctactgggcactctcgccagggcgaacaaaaggcgagggaagggcgctagttcactaggcgaaaattg 27848977  T
Q  99 cttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttac 197  Q
    |||||||||||||| ||||| |||||| ||| || |||||| |||||||||||| |||||| ||||  ||||||||||| ||| ||||||| | | ||||    
T  27848976 cttcgccagggcgaatcgtgtcagttc-agactcgtgaattctgcagtttttcaccaaaaa-tcccctttttccccaattcaatccccaaatctgtttac 27848879  T
Q  198 agtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggtt 257  Q
    |||||||||||||||| ||| ||||| || |||||||| ||| |  ||||||||||||||    
T  27848878 agtaatgttatgcaatcctaaaatcgacctgaacacaacctaagtacaattaacatggtt 27848819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 257
Target Start/End: Complemental strand, 3863604 - 3863418
Alignment:
Q  70 aatggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattt 168  Q
    |||||||  |||| ||||||||||||| |||||| |||||||||||||||||||| ||||  | |||||| || ||||||||| | |||||||||| |||    
T  3863604 aatggcgctattttgccaggcgaaaattgcttcgtcagggcgagtcgtgacagtt-cagacacgtgaattctgtagtttttca-ccaaaaatcccagttt 3863507  T
Q  169 tccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggtt 257  Q
    |||||||| ||| ||||||||| | ||| |||| | ||||| ||| ||| ||||| || |||||||| ||| |   |||||||||||||    
T  3863506 tccccaattcaatccccaaaactgtttatagtattattatgaaatcctataatcgacctgaacacaatctaagtataattaacatggtt 3863418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 257
Target Start/End: Complemental strand, 3872361 - 3872175
Alignment:
Q  70 aatggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattt 168  Q
    |||||||  |||| ||||||||||||| |||||| |||||||||||||||||||| ||||  | |||||| || ||||||||| | |||||||||| |||    
T  3872361 aatggcgctattttgccaggcgaaaattgcttcgtcagggcgagtcgtgacagtt-cagacacgtgaattctgtagtttttca-ccaaaaatcccagttt 3872264  T
Q  169 tccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggtt 257  Q
    |||||||| ||| ||||||||| | ||| |||| | ||||| ||| ||| ||||| || |||||||| ||| |   |||||||||||||    
T  3872263 tccccaattcaatccccaaaactgtttatagtattattatgaaatcctataatcgacctgaacacaatctaagtataattaacatggtt 3872175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 40909139 - 40909192
Alignment:
Q  70 aatggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttc 125  Q
    ||||||||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  40909139 aatggcgaaatttcgccaggcgaaaat-gcttcgcca-agcgagtcgtgacagttc 40909192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 32490547 - 32490614
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||| |||||| ||||||||||||||||| ||| ||||||||||  |||||| | ||||||    
T  32490547 tgcagtttttca-caaaaagtcccaattttccccaattcaatccccaaaacatattacagaagtgttat 32490614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 28 - 260
Target Start/End: Original strand, 66887 - 67119
Alignment:
Q  28 aacttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttcca 127  Q
    ||||| ||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  66887 aactttctggacactttcgccagggcgaaccaatggcgagggaaaggcgaaatttcgccaggcgaaaatggctttgccagggtgaatcgtgacagttcca 66986  T
Q  128 gaatcatgaatttgc-agtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgccc 226  Q
    ||||  ||||||||| | ||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||| ||||| ||    
T  66987 gaattgtgaatttgcaattttttcaccaaaaaa-cccaattttccccaattcaaaccccaaaataggttacagtaatattatgcaatcctaaaatcggcc 67085  T
Q  227 agaacacaaactaggcccaattaacatggttcct 260  Q
     |||||||| ||| |  |||||||||||||||||    
T  67086 tgaacacaatctaagttcaattaacatggttcct 67119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 36747 - 37006
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||| ||| |||||||| ||| |||  |||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||    
T  36747 atggcgaactaaggcattgttctcgggaaactttctgggcactttcgccagggcgaaccaatggcgagggaatggcgaaatatcgccaggcgaaaatggc 36846  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    ||||||||||||||||||||||||| | || || |||||| |||| ||||||| ||||||||| |||||||||||||| ||| ||||||||| | |||||    
T  36847 ttcgccagggcgagtcgtgacagtt-ctgactcgtgaattatgcattttttca-caaaaaatctcaattttccccaattcaatccccaaaactgtttaca 36944  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcct 260  Q
    | | | ||||| ||| ||| ||||| || |||||||| ||| |   ||||||||||||||||    
T  36945 gcattattatgaaatcctaaaatcggcctgaacacaatctaagtttaattaacatggttcct 37006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 29153 - 29412
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    ||||||||||||| |||||| ||||| || ||| |||  |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||    
T  29153 atggcgaactaagccagtgttctcggaaaactttctgggcactttcgccagggcgaaccaatggcgagggaatggcgaaatttcgccaggcaaaaatggc 29252  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    |||||||||||||||||||||||||   || || |||||| |||| ||||||| | ||||||||||||||||| |||| ||| ||||||||| | |||||    
T  29253 ttcgccagggcgagtcgtgacagtt-atgactcgtgaattctgcattttttca-ccaaaaatcccaattttcctcaattcaatccccaaaactgtttaca 29350  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcct 260  Q
    | | | ||||| ||| ||| ||||  || |||||||| ||| |  |||||||||||||||||    
T  29351 gcattattatgaaatcctaaaatcagcctgaacacaatctaagttcaattaacatggttcct 29412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 1591 - 1334
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| |||||||| ||| |||  |  ||||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||    
T  1591 atggcgaactaaggcagtgttctcgggaaacttactgg-ctttttcgccagggcgaaccaatggcgaggaaatggcaaaatttcgccaggcgaaaatggc 1493  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    ||||||||||||||||||||||||| | || || |||||| |||| ||||||| | |||||||||||||||||||||| |||  |||||||| | |||||    
T  1492 ttcgccagggcgagtcgtgacagtt-ctgactcgtgaattctgcattttttca-ccaaaaatcccaattttccccaattcaatacccaaaactgtttaca 1395  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcct 260  Q
      | | ||||| ||| ||| ||||| || |||||||| ||| |  |||||||||||||||||    
T  1394 acattattatgaaatccta-aatcggcctgaacacaatctaagttcaattaacatggttcct 1334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26754134 - 26754426
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    |||||||||||||||||||| |||||||| ||| ||  ||||||||||||||| | ||||||||||||||||| || ||||||||||| | |||||||||    
T  26754134 atggcgaactaaggcagtgttctcgggaaactttctagacactttcgccagggcgaaccaatggcgagggaatagcaaaatttcgccaagagaaaatggc 26754233  T
Q  100 ttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttaca 198  Q
    ||||||||||||| | ||||||||| | || || |||||| |||| ||||||| | ||||||||||| ||| |||||| | | ||||||||| | |||||    
T  26754234 ttcgccagggcgacttgtgacagtt-ctgactcgtgaattctgcattttttca-ccaaaaatcccaaattttcccaattcgatccccaaaactgtttaca 26754331  T
Q  199 gtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggttcctctacttttctatttctaggaatcgaaatcaaaa 293  Q
      | | ||||| ||| ||| ||||| || |||||||| ||| |  ||||||||||||||||| ||| |||  | ||| || |||| |||||||||    
T  26754332 acattattatgaaatcctaaaatcggcctgaacacaatctaagttcaattaacatggttcctatacattttcaattcaagaaatcaaaatcaaaa 26754426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 26707178 - 26707229
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacag 192  Q
    |||||||||||| ||| |||||||||||||||||||| ||| |||||||||||    
T  26707178 tgcagtttttca-caataaatcccaattttccccaattcaatccccaaaacag 26707229  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 26976912 - 26976963
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacag 192  Q
    |||||||||||| ||| |||||||||||||||||||| ||| |||||||||||    
T  26976912 tgcagtttttca-caataaatcccaattttccccaattcaatccccaaaacag 26976963  T

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Target: scaffold0322 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 19898 - 20093
Alignment:
Q  39 cactttcgccagggtggaccaatggcgagggaatggcgaaat--ttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatga 136  Q
    |||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||  |||||||||| ||||||||  |||||| ||| || |||    
T  19898 cactttcgccagggcgaaccaatggcgagggaatggcgaaatatttcgccaggcgaaaatt-cttcgccagg-cgagtcgtatcagttc-agactcgtga 19994  T
Q  137 atttgcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaa 235  Q
    ||||| ||||| |||| |||||| |||| ||||| |||||| ||| ||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||    
T  19995 atttgtagtttcttcaccaaaaa-tccccatttttcccaattcaatccccaaaacagtttacagtaatgttatgcaatcctaaaatcgccctgaacacaa 20093  T

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Target: scaffold0335 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 257
Target Start/End: Complemental strand, 7985 - 7793
Alignment:
Q  62 ggcgagggaatggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaat 160  Q
    |||||| ||| ||||  ||||||||||||||||||| |||||||||| |||||| || |||||| ||| || |||||| ||||||||||||||||||| |    
T  7985 ggcgagagaaaggcgccatttcgccaggcgaaaatg-cttcgccagg-cgagtcatgtcagttc-agactcctgaattctgcagtttttcatcaaaaa-t 7890  T
Q  161 cccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggtt 257  Q
    ||| |||||||| ||| ||| ||||||||| | |||||||||||||||||||| ||  ||||| || |||||||| ||| |  ||||||||||||||    
T  7889 ccccattttccctaattcaatccccaaaactgtttacagtaatgttatgcaatcctgaaatcgacctgaacacaatctaagtacaattaacatggtt 7793  T

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Target: scaffold0042 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 53503 - 53687
Alignment:
Q  4 gcgaactaaggcagtgtcctcgggaacttc--ctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggctt 101  Q
    |||||||||| |||||| |||||||| |||  |||  |||||||||||||| | ||||||||||||| |||||||  ||||||||||  |||||| ||||    
T  53503 gcgaactaagtcagtgttctcgggaatttctactgggcactttcgccagggcgaaccaatggcgaggaaatggcgctatttcgccagatgaaaat-gctt 53601  T
Q  102 cgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaa 188  Q
    |||||||| |||||||| ||||| |||| || ||| || |||||||||||| | ||||||||||||||| |||||| ||| |||||||    
T  53602 cgccagggtgagtcgtgtcagtt-cagactcgtgagttctgcagtttttca-ccaaaaatcccaatttttcccaattcaatccccaaa 53687  T

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Target: scaffold0562 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 257
Target Start/End: Complemental strand, 3180 - 2994
Alignment:
Q  70 aatggcgaaatttcgccaggcgaaaatggcttcgccagggcgagtcgtgacagttccagaatcatgaatt-tgcagtttttcatcaaaaaatcccaattt 168  Q
    |||||||  |||| ||||||||||||| |||||| |||||||||||||||||||| ||||  | |||||| || ||||||||| | |||||||||| |||    
T  3180 aatggcgctattttgccaggcgaaaattgcttcgtcagggcgagtcgtgacagtt-cagacacgtgaattctgtagtttttca-ccaaaaatcccagttt 3083  T
Q  169 tccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaaactaggcccaattaacatggtt 257  Q
    |||||||| ||| ||||||||| | ||| |||| | ||||| ||| ||| ||||| || |||||||| ||| |   |||||||||||||    
T  3082 tccccaattcaatccccaaaactgtttatagtattattatgaaatcctataatcgacctgaacacaatctaagtataattaacatggtt 2994  T

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Target: scaffold0160 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 15636 - 15742
Alignment:
Q  120 cagttccagaatcatgaatttgcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctag 218  Q
    ||||| ||||||| ||||||| |||||| ||||||||||| |||| ||||| |||||| ||| ||||||||||| |||||||||||| ||||||| |||     
T  15636 cagtttcagaatcgtgaatttacagtttcttcatcaaaaa-tccccatttttcccaattcaatccccaaaacagtttacagtaatgtcatgcaatcctaa 15734  T
Q  219 aatcgccc 226  Q
    ||||||||    
T  15735 aatcgccc 15742  T

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Target: scaffold0011 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 152952 - 153192
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc 99  Q
    ||||||| |||||||||||| |||||||| |||  ||  ||  ||||||| || | ||||||||||||  || ||| ||||||||||||||||||||  |    
T  152952 atggcgagctaaggcagtgttctcgggaaactttatgggcagcttcgccatggcgaaccaatggcgagcaaaaggcaaaatttcgccaggcgaaaatctc 153051  T
Q  100 --ttcgccagggcgagtcgtgacagttccagaatcatgaatttgcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggtta 196  Q
      | ||||||| |||   ||  ||||| ||||||| ||||||| |||||| |||| |||||| |||| |||||  ||||| ||| ||||||||||  |||    
T  153052 aatccgccagg-cgaaatgtatcagtttcagaatcgtgaatttacagtttcttcaccaaaaa-tccccattttttccaattcaatccccaaaacaattta 153149  T
Q  197 cagtaatgttatgcaattctagaatcgcccagaacacaaacta 239  Q
    ||||||||||||||||| ||| |||||||| ||||| ||||||    
T  153150 cagtaatgttatgcaatcctaaaatcgcccggaacataaacta 153192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 5474 - 5362
Alignment:
Q  120 cagttccagaatcatgaatttgcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctag 218  Q
    ||||| ||||||| ||||||| |||||| |||| |||||| ||||| ||||||| ||| ||| ||||||||||| ||||||||| |||||||||| |||     
T  5474 cagttacagaatcgtgaatttacagtttcttcaccaaaaattcccatttttccc-aattcaatccccaaaacagcttacagtaaagttatgcaatcctaa 5376  T
Q  219 aatcgcccagaaca 232  Q
    |||||||| |||||    
T  5375 aatcgcccggaaca 5362  T

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Target: scaffold0535; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 5591 - 5503
Alignment:
Q  1 atggcgaactaaggcagtgtcctcgggaa-cttcctgaacactttcgccagggtggaccaatggcgagggaatggcgaaatttcgccag 88  Q
    ||||||| |||||||||||| |||||||| ||| |||  ||  ||||||| || | ||||||||||||  || ||||||||||||||||    
T  5591 atggcgagctaaggcagtgttctcgggaaactttctgggcagcttcgccatggcgaaccaatggcgagcaaaaggcgaaatttcgccag 5503  T

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Target: scaffold0395 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 235
Target Start/End: Complemental strand, 1705 - 1514
Alignment:
Q  44 tcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcgaaaatggc--ttcgccagggcgagtcgtgacagttccagaatcatgaatttg 141  Q
    ||||||||| | ||||| ||||||  |||||||||||||||||||||||||||  |  | ||||||| |||   ||  ||||||||||||| |||||||     
T  1705 tcgccagggcgaaccaa-ggcgagcaaatggcgaaatttcgccaggcgaaaatctcaatccgccagg-cgaaatgtatcagttccagaatcgtgaattta 1608  T
Q  142 cagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaacacaa 235  Q
    |||||| |||| | ||||||||| ||||| | |||| ||| |||||||| || ||||||||| |||||||||| ||| |||||||  ||||||||    
T  1607 cagtttcttca-ccaaaaatccccatttttcgcaattcaatccccaaaatagtttacagtaaagttatgcaatcctaaaatcgcctggaacacaa 1514  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 21527025 - 21526963
Alignment:
Q  146 ttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| | ||||||    
T  21527025 ttttcatccaaaaatcccaattttccccaattcaatccccaaaacagattacagaagtgttat 21526963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1913 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1913
Description:

Target: scaffold1913; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 653 - 722
Alignment:
Q  157 aaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattctagaatcgccc 226  Q
    ||||||| ||||| |||||| ||| ||||||||||| ||||||||| |||||||||| ||| ||||||||    
T  653 aaatccccatttttcccaattcaatccccaaaacagtttacagtaaagttatgcaatcctaaaatcgccc 722  T

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Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 56623 - 56511
Alignment:
Q  119 acagttccagaatcatgaatttgcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattcta 217  Q
    |||||| ||||||| |||||| ||||||  |||| ||||| |||||| ||||||| | | ||| ||||||||| | |||||||||||||||||||| |||    
T  56623 acagtttcagaatcgtgaatt-gcagttccttcaccaaaagatcccatttttcccaatttcaa-ccccaaaacggtttacagtaatgttatgcaatccta 56526  T
Q  218 gaatcgcccagaaca 232  Q
     |||||||| |||||    
T  56525 aaatcgcccggaaca 56511  T

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Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 142010 - 142122
Alignment:
Q  119 acagttccagaatcatgaatttgcagttt-ttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttatgcaattcta 217  Q
    |||||| ||||||| |||||| ||||||  |||| ||||| |||||| ||||||| | | ||| ||||||||| | |||||||||||||||||||| |||    
T  142010 acagtttcagaatcgtgaatt-gcagttccttcaccaaaagatcccatttttcccaatttcaa-ccccaaaacggtttacagtaatgttatgcaatccta 142107  T
Q  218 gaatcgcccagaaca 232  Q
     |||||||| |||||    
T  142108 aaatcgcccggaaca 142122  T

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Target: scaffold0610 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0610
Description:

Target: scaffold0610; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 6344 - 6395
Alignment:
Q  180 aaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaac 231  Q
    ||||||||||| | |||||||||||||||||||| ||| ||||||| |||||    
T  6344 aaccccaaaacggtttacagtaatgttatgcaatcctaaaatcgcctagaac 6395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0610; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 6207 - 6256
Alignment:
Q  43 ttcgccagggtggaccaatggcgagggaatggcgaaatttcgccaggcga 92  Q
    |||||||||| | |||| ||||||| ||| ||||||||||||||||||||    
T  6207 ttcgccagggcgaaccattggcgagcgaaaggcgaaatttcgccaggcga 6256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 8329 - 8376
Alignment:
Q  142 cagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaac 190  Q
    ||||||||||||||||  ||||||||||||||||| ||| |||||||||    
T  8329 cagtttttcatcaaaag-tcccaattttccccaattcaatccccaaaac 8376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 16626 - 16574
Alignment:
Q  180 aaccccaaaacaggttacagtaatgttatgcaattctagaatcgcccagaaca 232  Q
    ||||||||||| | |||||||||||||||||| | ||| |||||||| |||||    
T  16626 aaccccaaaacggtttacagtaatgttatgcattcctaaaatcgcccggaaca 16574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 31695 - 31628
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||| |||||| |||||||||| |||||| ||| ||||||||| | |||||| | ||||||    
T  31695 tgcagtttttcaccaaaaa-tcccaatttttcccaattcaatccccaaaactgattacagaagtgttat 31628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 182296 - 182229
Alignment:
Q  140 tgcagtttttcatcaaaaaatcccaattttccccaatccaaaccccaaaacaggttacagtaatgttat 208  Q
    |||||||||||| |||||| ||||||||||||||||| | | ||||||||| | |||||| | ||||||    
T  182296 tgcagtttttcaccaaaaa-tcccaattttccccaattcgatccccaaaactgattacagaagtgttat 182229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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