View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_11 (Length: 405)
Name: NF10419_low_11
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Complemental strand, 41169206 - 41168827
Alignment:
| Q |
15 |
agttatattaagtggatggttggtgaattacgtcatcttgttgtattcattaaccatctaaataagataattgatcatatattttgannnnnnnngtcaa |
114 |
Q |
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| T |
41169206 |
agttatattaagtggatggttggtgaattacgtcatcttgttgtattcattaaccatctaaataatataattgatcatatattttgattttttttgtcaa |
41169107 |
T |
|
| Q |
115 |
attttgatgttaaatttatttctcacaactcgtccatttttaacgtttgattacggaatgattattcgttgagcgtttgcctttcatttgaacaattagt |
214 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41169106 |
attttgatgttaaatttatttctcacaactcttccatttttaacgtttgattacggaatgattattcgttgagcgtttgcctttcatttgaacaattggt |
41169007 |
T |
|
| Q |
215 |
actagtacattgataaagcatctagagtctagactaataattaagtgtctaaaatattcttttacaaaacaaaggtgtaaaacattcattgcaatcgagg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41169006 |
actagtacattgataaagcatctagagtctagactaataattaagtgtctaaaatattcttttacaaagcaaaggtgtaaaacattcattgcaatcgagg |
41168907 |
T |
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| Q |
315 |
taagtttgttctccttgaatgaacagcgacacttgaattcaacttaccatttctaagctctcccacctattttgtttcat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41168906 |
taagtttgttctccttgaatgaacagcgacacttgaattcaacttaccatttctaagctctcccacctattttgtttcat |
41168827 |
T |
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