View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_12 (Length: 401)
Name: NF10419_low_12
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 5372077 - 5371705
Alignment:
| Q |
19 |
aagaatttgttggtgaataatatataattatcttttatttgtgcggtgaagatcaaagaaatttggtggtggttctccggtaaggatggttgttgccgca |
118 |
Q |
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| T |
5372077 |
aagaatttgttggtgaataatatacaattatcttttatttgtgcggtgaagatcaaagaaatttggtggtggttctccggtaaggatggttgttgccgcg |
5371978 |
T |
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| Q |
119 |
gtggttcaaggtatttcatcgtggagaaaagcaatttcatcacgaaggagaattgtgtctgcagacacgttagcacttcaatgcccgagttagtatttga |
218 |
Q |
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| T |
5371977 |
gtggttcaaggtatttcatcgtggagaaaagcaatttcgtcacgaaggagaattgtgtctgcagacacgttaacacttcaatgcccgagtcagtatttga |
5371878 |
T |
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| Q |
219 |
aagaggtggattgtgtgtgagaattgggtgaatgagaatatatcttgtgtggcgctgagtcacacttaaacagtcgaagaggtcaataactacatctcgg |
318 |
Q |
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| T |
5371877 |
aagaggtggattgtgtgtgagaattgggtgaatgagaatatatcttgcgtgccgctgagtcacacttatatagtcgaagaggtcaataactacatctcgg |
5371778 |
T |
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| Q |
319 |
ttttgcggcgtgaatcctggaaaccgctagagattattttgacggttgggattgatcctagcacgctcctatg |
391 |
Q |
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| T |
5371777 |
ttttgcggcgtgaatcctggaagccgctagagattattttgacggttgggattgatcctagcacgctcctatg |
5371705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 30808717 - 30808627
Alignment:
| Q |
161 |
cgaaggagaattgtgtctgcagacacgttagcacttcaatgcccgagttagtatttgaaagaggtggattgtgtgtgagaattgggtgaat |
251 |
Q |
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| T |
30808717 |
cgaaagagaatggtgcctgcagacacgttagcactccaacactcaagtcggtatgtgaaagaggtggattgtgtgtgaaaactgggtgaat |
30808627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 39557056 - 39556988
Alignment:
| Q |
55 |
atttgtgcggtgaagatcaaagaaatttggtggtggttctccggtaaggatggttgttgccgcagtggt |
123 |
Q |
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| T |
39557056 |
atttgttcggtgaagattagagacatgtagtggtggttctccagtaaggatggttgttgtcgcggtggt |
39556988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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