View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10419_low_14 (Length: 373)

Name: NF10419_low_14
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10419_low_14
NF10419_low_14
[»] chr5 (2 HSPs)
chr5 (18-316)||(5178033-5178331)
chr5 (120-189)||(13682028-13682097)
[»] chr4 (1 HSPs)
chr4 (117-186)||(40190009-40190078)
[»] chr1 (1 HSPs)
chr1 (117-185)||(4846639-4846707)
[»] chr3 (1 HSPs)
chr3 (117-185)||(47753423-47753491)
[»] chr7 (2 HSPs)
chr7 (119-189)||(30619635-30619705)
chr7 (119-191)||(2051149-2051221)


Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 5178033 - 5178331
Alignment:
Q  18 aattacatattagttactgtcagaactgaattagatccttgaattgaagacaaaatggcaaagaagttaatcattactggaaaatttatacgagtggagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178033 aattacatattagttactgtcagaactgaattagatccttgaattgaagacaaaatggcaaagaagttaatcattactggaaaatttatacgagtggagg 5178132  T
Q  118 gtccccaatacttgagtgcagccatatcataagctcttgcagctttttcttctatatcataaccacctacaataaaattcttggagttacttatacacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5178133 gtccccaatacttgagtgcagccatatcataagctcttgcagctttttcttctatatcataaccacctacaataaaattcttggacttacttatacacat 5178232  T
Q  218 aaatgttcctctttttctatcatcataaggaaaagaaacacattcttaacatttggaaatcttacctagataaactgaagaatcattgtgcatgaggag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178233 aaatgttcctctttttctatcatcataaggaaaagaaacacattcttaacatttggaaatcttacctagataaactgaagaatcattgtgcatgaggag 5178331  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 13682028 - 13682097
Alignment:
Q  120 ccccaatacttgagtgcagccatatcataagctcttgcagctttttcttctatatcataaccacctacaa 189  Q
    ||||||||||| || ||||||| |||||| | |||||| || ||||||||| | ||||| ||||||||||    
T  13682028 ccccaatactttagagcagccaaatcataggatcttgcggccttttcttctttgtcatatccacctacaa 13682097  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 40190078 - 40190009
Alignment:
Q  117 ggtccccaatacttgagtgcagccatatcataagctcttgcagctttttcttctatatcataaccaccta 186  Q
    |||||||||||||||||||| ||   |||||||||||| |||||||||||||| ||||||||||||||||    
T  40190078 ggtccccaatacttgagtgctgcttgatcataagctctagcagctttttcttccatatcataaccaccta 40190009  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 4846639 - 4846707
Alignment:
Q  117 ggtccccaatacttgagtgcagccatatcataagctcttgcagctttttcttctatatcataaccacct 185  Q
    ||||||||||| ||||| ||||| | ||||||||||||||||||||| ||||| |||||||||||||||    
T  4846639 ggtccccaatatttgagagcagcaagatcataagctcttgcagctttctcttccatatcataaccacct 4846707  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 47753491 - 47753423
Alignment:
Q  117 ggtccccaatacttgagtgcagccatatcataagctcttgcagctttttcttctatatcataaccacct 185  Q
    |||||||||||||| || || ||   ||||||||||||||||||||| ||||| |||||||||||||||    
T  47753491 ggtccccaatacttaagagctgcttgatcataagctcttgcagctttctcttccatatcataaccacct 47753423  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 30619635 - 30619705
Alignment:
Q  119 tccccaatacttgagtgcagccatatcataagctcttgcagctttttcttctatatcataaccacctacaa 189  Q
    ||||||||| || ||||| |||| |||||| ||||| || |||||||||||| | |||||||| |||||||    
T  30619635 tccccaatattttagtgctgccaaatcataggctctagctgctttttcttctttgtcataacctcctacaa 30619705  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 2051221 - 2051149
Alignment:
Q  119 tccccaatacttgagtgcagccatatcataagctcttgcagctttttcttctatatcataaccacctacaata 191  Q
    |||||||||||| |||||||| | |||||| |||||||||||   |||||||  ||||||| | |||||||||    
T  2051221 tccccaatacttaagtgcagctaaatcatatgctcttgcagcagattcttcttcatcataagcccctacaata 2051149  T

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