View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_16 (Length: 302)
Name: NF10419_low_16
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_16 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 21449 - 21197
Alignment:
| Q |
17 |
agttgtggaagggaaggtgttgtgagacaatatgtaagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21449 |
agttgtggaagggaaggtgttgtgagacaatatgtaagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattg |
21350 |
T |
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| Q |
117 |
aaactcttggtggtcatcaaagtatgtatatttctacattactttattagatgttattttcttgtttcatttatatatagtactattactatggttaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21349 |
aaactcttggtggtcatcaaagtatgtatatttctacattactttattagatgttattttcttgtttcatttatatatag----------------aatt |
21266 |
T |
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| Q |
217 |
tttgatnnnnnnnnttgtcaaaatttatgtttcttttttcatttgtagaggctactcctaagcttgttc |
285 |
Q |
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| T |
21265 |
tttgataaaaaaaattgtcaaaatttatgtttcttttttcatttttagaggctactcctaaacttgttc |
21197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 25080630 - 25080515
Alignment:
| Q |
21 |
gtggaagggaaggtgttgtgagacaatatgtaagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaac |
120 |
Q |
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|||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| | ||| || | ||||||| |
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| T |
25080630 |
gtggaagggaaggtgtggcgagacaatatgtaagaccaaaggttccttgtttaagatggacacatgaacttcatcgttgctatatttgtgtc-ttgaaac |
25080532 |
T |
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| Q |
121 |
tcttggtggtcatcaaa |
137 |
Q |
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| T |
25080531 |
tcttgctggtcatcaaa |
25080515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 25138599 - 25138484
Alignment:
| Q |
21 |
gtggaagggaaggtgttgtgagacaatatgtaagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaac |
120 |
Q |
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|||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| | ||| || | ||||||| |
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| T |
25138599 |
gtggaagggaaggtgtggcgagacaatatgtaagaccaaaggttccttgtttaagatggacacatgaacttcatcgttgctatatttgtgtc-ttgaaac |
25138501 |
T |
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| Q |
121 |
tcttggtggtcatcaaa |
137 |
Q |
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||||| ||||||||||| |
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| T |
25138500 |
tcttgctggtcatcaaa |
25138484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 50872837 - 50872735
Alignment:
| Q |
38 |
gtgagacaatatgtaagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaactcttggtggtcatcaaa |
137 |
Q |
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||||| || ||| |||||||||| || |||||||| |||||||| |||||||||||||||||||||||| |||| ||| |||| ||||| |||||||| | |
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| T |
50872837 |
gtgaggcagtatataagatcaaaagtccctcgtttgagatggactcctgaacttcatcgttgctttgttcatgctattcaaacccttggaggtcatcata |
50872738 |
T |
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| Q |
138 |
gta |
140 |
Q |
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||| |
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| T |
50872737 |
gta |
50872735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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