View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_17 (Length: 294)
Name: NF10419_low_17
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 43452638 - 43452364
Alignment:
| Q |
15 |
atttagtttgatcaactcagnnnnnnnttcaacaatcttgaaacgttctgcatcatttgcatggatgaagctctccataatagaagagagctctgctttg |
114 |
Q |
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| T |
43452638 |
atttagcttgatcaactcagaaaaaaattcaacaatcttgaaacgttctgcatcatttgcatggatgaagctctccataatagaagagagctctgctttg |
43452539 |
T |
|
| Q |
115 |
tcagcaatggtgttcctacaagtcccatcctcttgcatgcatcttaataagatctccactgcaacaatcctctcctctgcccattcagctcctaaactgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43452538 |
tcagcaatggtgttcctacaagtcccatcctcttgcatgcatcttaataagatctccactgcaacaatcctctcctctgcccattcagctcctaaactgc |
43452439 |
T |
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| Q |
215 |
caacaatagctccaagtgctttttcagagaacaaagtcttgacaaccgaagatgcaattatctcatctctgcttc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
43452438 |
caacaatagctccaagtgctttttcagagaacaaagtcttgacaatcgaagatgcaattatctcatcactgcttc |
43452364 |
T |
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