View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10419_low_2 (Length: 482)
Name: NF10419_low_2
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 34609631 - 34610084
Alignment:
| Q |
18 |
gtggtgaagtgaaaaggaaggaaaaaagaacactcacacacgtgacttcattttttctataaatgtggagtgaagagtctctctctttatcgtctttaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34609631 |
gtggtgaagtgaaaaggaaggaaaaaagaacactcacac--gtgacttcatttt-tctataaatgtggagtgaagagtctctctctttatcgtctttaaa |
34609727 |
T |
|
| Q |
118 |
ctttgcttcatcttctttattctagaaatttcttttgttacagtggtgttgcagatttcacgacgacgacggttgcgcggtggaagatcggaagaaaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34609728 |
ctttgcttcatcttctttattctagaaatttcttttgtttcagtggtgttacagatttcacgacgacgacggttgcgcggtggaagatcggaagaaaaag |
34609827 |
T |
|
| Q |
218 |
aaagtgagtcgccgtacctgcatgtcagtgtactgtcttgatacctattgtggtgctggaatcggcgaaatagcgaatcctttgcaatggcctcagcttc |
317 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34609828 |
aaggtgagtcgccgtacctgcatgtcagtgtactgtcttgatacctattgtggtgctggaatcggcgaaatagcgaatcctttgcaatggcctcagcttc |
34609927 |
T |
|
| Q |
318 |
gcaaaagacgacgtcatcaccgtcttcttcttgttgtccccctctcgactcttcccgcttagctgctgtctccgccgcccccgccgttgctcaatccgat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34609928 |
gcaaaagacgacgtcatcaccgtcttcttcttgttgtacccctctcgactcttcccgcttagctgctgtctccgccgcccccgccgttgctcaatccgat |
34610027 |
T |
|
| Q |
418 |
cacgttgctttgattcgtccgcttgattcgcttcctgaaccttctagtacctatgct |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34610028 |
cacgttgctttgattcgtccgcttgattcgcttcctgaaccttctagtaccaatgct |
34610084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University