View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_20 (Length: 256)
Name: NF10419_low_20
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 9025969 - 9026054
Alignment:
| Q |
22 |
gccataatgaaaatgaaatcaacagtaaccatatttatcaaatcaaacgacaagaataaataatgactccactttaaattaatctc |
107 |
Q |
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| T |
9025969 |
gccataatgaaaatgaaatccatagtaaccatatttatcaaatcaaacgacaagaataaataatgactccactttaaattaatctc |
9026054 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 9026063 - 9026123
Alignment:
| Q |
185 |
tttccatttcttttgcaagggaacataactcaaacccttgtttttctttttcacacttcat |
245 |
Q |
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| T |
9026063 |
tttccatttcttttccaagggaacataactcaaacccttgtttttctttttcacacttcat |
9026123 |
T |
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