View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_23 (Length: 250)
Name: NF10419_low_23
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_23 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 664704 - 664943
Alignment:
| Q |
11 |
cagagacttccactattgaagcatacatccgaactttcgtaatccaaaccggatatggatacgtgtctaatccgaaagaccataaacactaccatatcac |
110 |
Q |
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| T |
664704 |
cagagacttccactattgaagcatacatcctaactttcgtaatccaaaccggatatggatacgtgtctaatccgaaagaccataaacactaccatatcac |
664803 |
T |
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| Q |
111 |
agaaccggtaagaaaacaatgaaaccaagcaaagcgatggataaaggtggttgggccggttctatcaattagaccatannnnnnnnaaccttttagaggt |
210 |
Q |
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| T |
664804 |
agaaccggtaagaaaacaatgaaaccaagcaaagcgatggataaaggtggttgggccggttctatcaattagaccatattttttttaaccttttagaggt |
664903 |
T |
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| Q |
211 |
atagatcacattgcacccacaaaaagcaaaagcaaaagtc |
250 |
Q |
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| T |
664904 |
atagatcacattgcacccacaaaaagcaaaagcaaaagtc |
664943 |
T |
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Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 204966 - 204918
Alignment:
| Q |
202 |
tttagaggtatagatcacattgcacccacaaaaagcaaaagcaaaagtc |
250 |
Q |
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| T |
204966 |
tttagaggtatagatcacattgcacccacaaaaaacaaaagcagaagtc |
204918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 4502477 - 4502445
Alignment:
| Q |
202 |
tttagaggtatagatcacattgcacccacaaaa |
234 |
Q |
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| T |
4502477 |
tttagaggtatagatcacattgcacccacaaaa |
4502445 |
T |
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