View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_24 (Length: 249)
Name: NF10419_low_24
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 37375549 - 37375319
Alignment:
| Q |
1 |
ctttcaaaactactgcaaagcataggcagaactgtctatatattcttgtacatgacgatgcaaatttaaattaatacatgaatgtataatcaatcaatac |
100 |
Q |
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| T |
37375549 |
ctttcaaaactactgcaaagcataggcagaactgtctatatattcttgtacatgataatgcaaatttaaattaatacatgaatgtataatcaatcaatac |
37375450 |
T |
|
| Q |
101 |
tttgtagatttaaaatcatcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcag |
200 |
Q |
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| T |
37375449 |
tttgtagatttaaaatcatca-------------tgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcag |
37375363 |
T |
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| Q |
201 |
catactgctcatgaagagatctcaaaaaagctctctctgctcct |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37375362 |
catactgctcatgaagagatctcaaaaaagctctccctgctcct |
37375319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 37382882 - 37382658
Alignment:
| Q |
18 |
aagcataggcagaactgtctatatattcttgtacatgacgatgcaaatttaaattaatacatgaatgtataatcaatcaatactttgtagatttaaaatc |
117 |
Q |
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| T |
37382882 |
aagcataggcaaaactgtgtatat--tcttgtacatgataatgcaattccaaattaatacatgaatgtataatcaatcaatagtttgtaaattcaaaatc |
37382785 |
T |
|
| Q |
118 |
atcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgctcatgaaga |
217 |
Q |
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| T |
37382784 |
atcatgattgttgtcaatgatatgataaaaatgttgtgacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgtgcataaaga |
37382685 |
T |
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| Q |
218 |
gatctcaaaaaagctctctctgctcct |
244 |
Q |
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| T |
37382684 |
gatctcaaaaaagctcttcctgctcct |
37382658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 37360650 - 37360518
Alignment:
| Q |
96 |
aatactttgtagatttaaaatcatcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacacccca |
195 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
37360650 |
aatactttgtagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttagttagttgtgcgagtaccaagatcaacacccca |
37360551 |
T |
|
| Q |
196 |
agcagcatactgctcatgaagagatctcaaaaa |
228 |
Q |
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| T |
37360550 |
agcagcatactgctcatgaagggatctcaaaaa |
37360518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 37367412 - 37367544
Alignment:
| Q |
96 |
aatactttgtagatttaaaatcatcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacacccca |
195 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
37367412 |
aatactttttagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttagttagttgtgcgagtaccaagatcaacacccca |
37367511 |
T |
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| Q |
196 |
agcagcatactgctcatgaagagatctcaaaaa |
228 |
Q |
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| T |
37367512 |
agcagcatactgctcatgaagggatctcaaaaa |
37367544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 37386342 - 37386407
Alignment:
| Q |
176 |
gtaccaagatcaacacccc-aagcagcatactgctcatgaagagatctcaaaaaagctctctctgc |
240 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| |||| |
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| T |
37386342 |
gtaccaagatcaacacccccaagcagcatactgctcataaagggatctcaaaaaagctctccctgc |
37386407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 41229855 - 41229919
Alignment:
| Q |
176 |
gtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctctctgc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||| |
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| T |
41229855 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaacgctctccctgc |
41229919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 41229716 - 41229754
Alignment:
| Q |
68 |
aaattaatacatgaatgtataatcaatcaatactttgta |
106 |
Q |
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| T |
41229716 |
aaattaacacatgaatgtataatcaatcaatactttgta |
41229754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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