View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_25 (Length: 249)
Name: NF10419_low_25
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26334916 - 26335132
Alignment:
| Q |
1 |
gtcttcagcctcccaccgtgttttcactaagcagcccaaatgacaaaatcaaaccttaattattcacaaattcaaccatttaatcctttttgtaacataa |
100 |
Q |
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|||||||||||||||||||||||| |||| |||||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26334916 |
gtcttcagcctcccaccgtgttttaactacgcagcc-aaattacaaaatcaaatcttaattattcacaaattcaaccattcaatcctttttgtaacataa |
26335014 |
T |
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| Q |
101 |
ttctcacattccaactgtttgccacgtcttcctcctttcac--tataaaaccctaaatttatccatcatatattcaattatattttactctctcctttct |
198 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26335015 |
ttctcacattccaactgtttgccacgt----ctcctttcactatataaaaccctaaatttatccatcatatattcaattatattttactctctcctttct |
26335110 |
T |
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| Q |
199 |
aacttcccaacaaaaatctcaa |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
26335111 |
aacttcccaacaaaaatctcaa |
26335132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 26326949 - 26327115
Alignment:
| Q |
1 |
gtcttcagcctcccaccgtgttttcactaagcagcccaaatgacaaaatcaaaccttaattattcacaaattcaaccatttaa-tcctttttgtaacata |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
26326949 |
gtcttcagcctcccaccgtgttttcactaagcagcccaa-tgacaaaatcaaatcttaattattcacaaattcaaccattcaaatcctttttgtaacata |
26327047 |
T |
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| Q |
100 |
attctcacattccaactgtttgccacgtcttcctcctttcactataaaaccctaaatttatccatcat |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
26327048 |
attctcacattccaactgtttgccacgtcttcctcctttcactataaaaccctaaattaattcatcat |
26327115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 26327161 - 26327233
Alignment:
| Q |
170 |
attcaattatattttactctctcctttctaacttcccaacaaaaatctcaaaaccttcatcattccctttgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26327161 |
attcaattatattttactctctcctttctaacttcccaacaaaaatctcaaaaccttcatcattcccattgct |
26327233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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