View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_28 (Length: 240)
Name: NF10419_low_28
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 30261706 - 30261922
Alignment:
| Q |
3 |
gagggagtatcttgtacaatctccgtaaactcgacttgtactcttgttaagagnnnnnnnaacagttgttaagggtttatcatatgcaataataatgttt |
102 |
Q |
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| T |
30261706 |
gagggagtatcttgtacaatctccataaactcgacttgtactcttgttaagagtttttttaacagttgttaagggtttatcatatgcaataataatgttt |
30261805 |
T |
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| Q |
103 |
aaacatcaattatagtgttcaaatgataaaactcaagaatttcaatggaaaagtgatgagcaaagctctacaactgtgaaaatatggcaacagaaacaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30261806 |
aaacatcaattatagtgttcaaatgataaaactcaagaatttcaatggaagagtgatgagcaaagctctacaactgtgaaaatatggcaacagaaacaga |
30261905 |
T |
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| Q |
203 |
aaatgataccagagttc |
219 |
Q |
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||||||||||||||||| |
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| T |
30261906 |
aaatgataccagagttc |
30261922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 35594646 - 35594591
Alignment:
| Q |
164 |
aaagctctacaactgtgaaaatatggcaacagaaacagaaaatgataccagagttc |
219 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
35594646 |
aaagctctacaactgtgaaaatatggcaatagaagcagaaaatgataccaaagttc |
35594591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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