View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_3 (Length: 481)
Name: NF10419_low_3
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 46597487 - 46597205
Alignment:
| Q |
11 |
caaaggcagcttgttctgtagatatccatttatcaatcaaagggcgaaggcggttagccagcaccttagaaataattttgtataggatattaaagaggga |
110 |
Q |
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| T |
46597487 |
caaaggcagcttgttctgtagatatccatttatcaatcaaagggcgaaggcggttagccagcaccttagaaataattttatataggacattacagaggga |
46597388 |
T |
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| Q |
111 |
gatagggcgaaggtctttcatatattccgggtaatcatcctttggagcgagcacgatgtgtgtggcattcaactcagggggaaaggaactagaagtgagc |
210 |
Q |
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| T |
46597387 |
gatagggcgaaggtctttcatatattccgggttatcaccctttggagcgagcacgatgtgtgtggcattcaactcagggggaaaggaaccagaagtgagc |
46597288 |
T |
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| Q |
211 |
caagaggaagcaacataaaatatttctccacctaattccttccaaaaacggtggtaaaaagcaggattcagaccatccggtcc |
293 |
Q |
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| T |
46597287 |
caagaggaagcaacaaaaaatatttctccacctaattccttccaaaaacggtggtaaaaagcagaattcagaccatccggtcc |
46597205 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 16860678 - 16860599
Alignment:
| Q |
262 |
tggtaaaaagcaggattcagaccatccggtccgggggatttatcaggatgcatattaaatattgcttcatgaaattcttg |
341 |
Q |
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| T |
16860678 |
tggtaaaatgctggatttagaccatccggacccggagatttatccggatgcatactaaaaattgcctctttaaattcttg |
16860599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 9183363 - 9183428
Alignment:
| Q |
250 |
ttccaaaaacggtggtaaaaagcaggattcagaccatccggtccgggggatttatcaggatgcata |
315 |
Q |
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| T |
9183363 |
ttccagaatcggtggaaaaaagcaggattaagaccgtcaggtccaggtgatttatctggatgcata |
9183428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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