View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_32 (Length: 223)
Name: NF10419_low_32
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 41316071 - 41316263
Alignment:
| Q |
13 |
agatgaagtgacgaatcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcg |
112 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41316071 |
agatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcg |
41316170 |
T |
|
| Q |
113 |
cgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatcagcaatagaggaagtatcaagtttgttgggaggcgtttgtattgtg |
205 |
Q |
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| T |
41316171 |
cgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatcagcaatagaggaagtagcaagtttgttgggaggcgtttgtattgtg |
41316263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 41324140 - 41324331
Alignment:
| Q |
13 |
agatgaagtgacgaatcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcg |
112 |
Q |
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||||||||| | ||||||| || ||||||||||| ||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||||||| || |
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| T |
41324140 |
agatgaagtatcaaatcttgctacatcaataactgcaagtgaaggatcaattgttaatctcactcataagattttctcaatgacatatgggataacaacg |
41324239 |
T |
|
| Q |
113 |
cgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatcagcaatagaggaagtatcaagtttgttgggaggcgtttgtattgt |
204 |
Q |
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| T |
41324240 |
cgggcggcttttggcaaaaggagcaaacaccagcaatcgtttaaatcagcagtagaggaaatagtaagtttgttgggaggcatttgtattgt |
41324331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 41332051 - 41332214
Alignment:
| Q |
13 |
agatgaagtgacgaatcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcg |
112 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||| |||| |||| |||||||||||||| |
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| T |
41332051 |
agatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcggttgtaaatctcactcggaagattttctcaatgacaaatgggataacagcg |
41332150 |
T |
|
| Q |
113 |
cgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatcagcaatagaggaagtat |
176 |
Q |
| |
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|| || |||||||||||||||| | | ||||||| ||||| | ||||||||| ||| |||||| |
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| T |
41332151 |
cgggcagcttttgggaaaaggaatagaaaccaagatgtgttcatatcagcaatggagaaagtat |
41332214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 41322121 - 41322262
Alignment:
| Q |
13 |
agatgaagtgacgaatcttgttaaatcaataactgt-aagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagc |
111 |
Q |
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|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||||| |
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| T |
41322121 |
agatgaagtgacaaatcttgttaaatcaataacttttaagtgaaggatcagttgttaatctcagtgagaagattttctcaatgacatatgggataacagc |
41322220 |
T |
|
| Q |
112 |
gcgagcggcttttgggaaaaggagcaaacaccaagaagtgtt |
153 |
Q |
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| | |||| |||||||||||||| | ||||||||| ||||| |
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| T |
41322221 |
gagggcggtttttgggaaaaggaatagacaccaagatgtgtt |
41322262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 41328054 - 41328178
Alignment:
| Q |
29 |
cttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttggga |
128 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||||| || |||||||||| |
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| T |
41328054 |
cttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcggaagattttctcaatgacaaatgggataacagcgcgggcagcttttggga |
41328153 |
T |
|
| Q |
129 |
aaaggagcaaacaccaagaagtgtt |
153 |
Q |
| |
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|||||| | ||||||||| ||||| |
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| T |
41328154 |
aaaggaatagacaccaagatgtgtt |
41328178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 41286143 - 41286243
Alignment:
| Q |
49 |
aagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttgggaaaaggagcaaacaccaagaa |
148 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| || |||||||||||| || || |||||||||| |
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| T |
41286143 |
aagtgaaggatcagttgttaatctcactcagaagattttgtcaacaacctatgggataacggcgcgtgcaacttttgggaaaaagaacatacaccaagaa |
41286242 |
T |
|
| Q |
149 |
g |
149 |
Q |
| |
|
| |
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|
| T |
41286243 |
g |
41286243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 31188807 - 31188662
Alignment:
| Q |
26 |
aatcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttg |
125 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| |||||||||||| ||| |||||||| | || ||||| |||||||| | ||||| || |||| |
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| T |
31188807 |
aatcttgttaaatcaatatctgcaagtgaaggatcaattgttaatctcagtcataagatttttttaatgacatcagggataacgacacgagcagcgtttg |
31188708 |
T |
|
| Q |
126 |
ggaaaaggagcaaacaccaagaagtgtttagatcagcaatagagga |
171 |
Q |
| |
|
|||||||||| ||||||||||||| || | |||||||||| |||| |
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| T |
31188707 |
ggaaaaggagtaaacaccaagaagctttcaaatcagcaataaagga |
31188662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 41366244 - 41366383
Alignment:
| Q |
26 |
aatcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttg |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||| | ||| ||| |||||| |||||||| || || |||| |
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|
| T |
41366244 |
aatcttgttaaatcaataactgcaagtgaaggatcggttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcgggcagcatttg |
41366343 |
T |
|
| Q |
126 |
ggaaaaggagcaaacaccaagaagtgtttagatcagcaat |
165 |
Q |
| |
|
| |||| || ||||||||||||||||||| ||||||||| |
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| T |
41366344 |
gaaaaaagaataaacaccaagaagtgtttaaatcagcaat |
41366383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 31178762 - 31178585
Alignment:
| Q |
26 |
aatcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttg |
125 |
Q |
| |
|
|||||| ||||||| ||| || |||| ||||||||||||| ||||||| ||| |||||||| ||| ||||| | |||||| | ||||| || |||| |
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|
| T |
31178762 |
aatcttattaaatcgatatctacaagtaaaggatcagttgtaaatctcagtcataagattttcgcaatgacatcggcgataacgacacgagcagcgtttg |
31178663 |
T |
|
| Q |
126 |
ggaaaaggagcaaacaccaagaagtgtttagatcagcaatagaggaagtatcaagtttgttgggaggcgtttgtattg |
203 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||| ||||| || | |||||| ||||||| ||||||||| |
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|
| T |
31178662 |
ggaaaaggaataaacaccaacaagtgttccaatcagcaataaaggaaatagcgagtttgatgggaggattttgtattg |
31178585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 41431040 - 41431180
Alignment:
| Q |
51 |
gtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttgggaaaaggagcaaacaccaagaagt |
150 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| || || |||| |||| ||| ||||||| | || | | ||| || ||||||| |||||||||| |||| |
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|
| T |
41431040 |
gtgaaggatcaattgttaatctcactcggaacatattctcaatgacacatgagataacatcaagaacagttttcggcaaaaggaccaaacaccaacaagt |
41431139 |
T |
|
| Q |
151 |
gtttagatcagcaatagaggaagtatcaagtttgttgggag |
191 |
Q |
| |
|
||||| | | ||||| |||||| || |||||||||||||| |
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| T |
41431140 |
gtttataactgcaatggaggaaatagtaagtttgttgggag |
41431180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 31225006 - 31225184
Alignment:
| Q |
26 |
aatcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttg |
125 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||| |||||||||| | ||| ||||||| ||| ||||| |||||||| | | || || |||| |
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|
| T |
31225006 |
aatcttgttgaatcaatatctgcaagtgaaggatcaattgttaatctgagtcataagatttatgcaatgacatcggggataacgacacaggcagcgtttg |
31225105 |
T |
|
| Q |
126 |
ggaaaaggagcaaacaccaagaagtgtttagatcagcaatagaggaagtatcaagtttgttgggaggcgtttgtattgt |
204 |
Q |
| |
|
||||||||| || || || ||||||| ||||||||| || |||| || | |||||| ||||||| |||||||||| |
|
|
| T |
31225106 |
ggaaaaggaataagcagcatcaagtgttcagatcagcactaaaggagataactagtttgatgggaggattttgtattgt |
31225184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 41336994 - 41337072
Alignment:
| Q |
27 |
atcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggat |
105 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||| | ||||||||| || || |||||| |||| ||| |||||||| |
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|
| T |
41336994 |
atcttgttaaatcaatatctgcaaatgaaggatcaatcgttaatctctctaagtcgattttctcaatgacttatgggat |
41337072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 17249494 - 17249317
Alignment:
| Q |
27 |
atcttgttaaatcaataactgtaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttgg |
126 |
Q |
| |
|
||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| || |||||||||||| |||||||| ||||| || |
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|
| T |
17249494 |
atcttgttaaatcaatattttcaagtgaaggatgtgttgttaatctcactcagaagatttcttctttaacatatgggatagtggcgcgagcagctttcgg |
17249395 |
T |
|
| Q |
127 |
gaaaaggagcaaacaccaagaagtgtttagatcagcaatagaggaagtatcaagtttgttgggaggcgtttgtattgt |
204 |
Q |
| |
|
|||||||| |||||||||| ||||||| | |||||||||||||||| || |||||||||||||| |||||||||| |
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|
| T |
17249394 |
gaaaaggaacaaacaccaacaagtgttcaaatcagcaatagaggaaatagtgagtttgttgggaggattttgtattgt |
17249317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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