View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10419_low_8 (Length: 446)
Name: NF10419_low_8
Description: NF10419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10419_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 135 - 427
Target Start/End: Original strand, 4893494 - 4893786
Alignment:
| Q |
135 |
actctagttactctaaacatgaaaccaaacctaaatagtcatgtcagcaattcatattcatatgatgtgaattaattggtgcaaagttgttacaactact |
234 |
Q |
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| T |
4893494 |
actctagttgctctaaacatgaaaccaaacctaaatagtcatgttagcaattcatattcatatgatgtgaattaattggtgcaaggttgttacaactact |
4893593 |
T |
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| Q |
235 |
atataggtagctattaattataggaattttagcatctaagtaaactttattatgttgtnnnnnnntctacagatggacaaggcttcagtcctaggagatg |
334 |
Q |
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| T |
4893594 |
atataggtagctattaattataggaattttagcatctaagtaaactttattatgttgtaaaaaaatctacagatggacaaggcttcagtcctaggagatg |
4893693 |
T |
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| Q |
335 |
caatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagtcatgttcagtctgtggtgacggttgatg |
427 |
Q |
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| T |
4893694 |
caatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagtcatgttcagtctgtggtgacggttgatg |
4893786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 4893334 - 4893466
Alignment:
| Q |
1 |
tgatttatgtttttaatacatttatatagaattgatttgaacaacaaatttaagtgnnnnnnngatcacatttagactcaaaagctataaatcctaacct |
100 |
Q |
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| T |
4893334 |
tgatttatgtttttaatacatttacata-aattgatttgaacaacaaatttaagtgaaaaaaagatcacatttagactcaaaagctataaatcctaacct |
4893432 |
T |
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| Q |
101 |
ctatttaaaatcaattttagatgcaaaatcaatt |
134 |
Q |
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| T |
4893433 |
ctatttaaaatcaattttagatgcaaaatcaatt |
4893466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 4917113 - 4917213
Alignment:
| Q |
300 |
tctacagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagt |
399 |
Q |
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|||| |||||||||||||||||||| |||| ||||| |||||| | || ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
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| T |
4917113 |
tctatagatggacaaggcttcagtcataggggatgctatcaagcatgtaaaagagctccaagaacgtttgagagtattagaagaacaaaacaagaatagt |
4917212 |
T |
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| Q |
400 |
c |
400 |
Q |
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| T |
4917213 |
c |
4917213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 4910061 - 4910178
Alignment:
| Q |
303 |
acagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagtcat |
402 |
Q |
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| T |
4910061 |
acagacggacaatacttcagtcataggagatgctatcaagcatgtgaaagagctccaggaacgtttgagagtattagaagaagagaacaagaatagtcat |
4910160 |
T |
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| Q |
403 |
gttcagtctgtggtgacg |
420 |
Q |
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|| | ||||| |||||| |
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| T |
4910161 |
attgaatctgtagtgacg |
4910178 |
T |
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